Bugfix token attribute.

Bugfix missing update on headers token appending.

src/ingest_validation_tests/segmentation_mask_imagesize_validation.py

@@ -4,6 +4,7 @@
 import tifffile
 import xmlschema
 from ingest_validation_tools.plugin_validator import Validator
+
 from ingest_validation_tests.utils import GetParentData
 
 
@@ -44,6 +45,7 @@ class ImageSizeValidator(Validator):
 
     def collect_errors(self, **kwargs) -> List[Optional[str]]:
         del kwargs
+        print("Validating Image/SegMask sizes")
         if self.required not in self.contains and self.assay_type.lower() != self.required:
             return []  # We only test Segmentation Masks
         files_tested = None
@@ -62,7 +64,7 @@ def collect_errors(self, **kwargs) -> List[Optional[str]]:
 
                     for file in Path(
                         GetParentData(
-                            row["parent_dataset_id"], self.globus_token, self.app_context
+                            row["parent_dataset_id"], self.token, self.app_context
                         ).get_path()
                     ).glob(glob_expr):
                         parent_filenames_to_test.append(file)

src/ingest_validation_tests/utils.py

@@ -10,7 +10,7 @@ def __init__(self, hubmap_id, globus_token, app_context):
     def __get_uuid(self) -> None:
         url = self.app_context.get("uuid_url") + self.hubmap_id
         headers = self.app_context.get("request_headers", {})
-        headers({"Authorization": "Bearer " + self.token})
+        headers.update({"Authorization": "Bearer " + self.token})
         try:
             response = requests.get(url, headers=headers)
             response.raise_for_status()