Add generating 3D volumes and masks from segmentations #3
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Also generate a json with dicom metadata of the first dcm file
and a list of slices, with same order than the volume and SOPInstanceUID
When create_volumes and download_dicoms are ON, the grayscale
volume will be created in the downloaded dicoms folder.
The masks will be generated in the segmentations folder.
Improve README