-
Notifications
You must be signed in to change notification settings - Fork 2
PepFoot project file (.pfoot)
Jedd Bellamy-Carter edited this page Mar 29, 2022
·
1 revision
PepFoot .pfoot
files are a human-readable JSON file.
Not all of the data in the .pfoot
file is necessary for PepFoot to read them correctly.
The keys correspond to the following schema:
Key | Description |
---|---|
name | Project name |
creation date | Creation datetime of project |
data files | List of data files [filepath1, filepath2, ...]
|
sequence | Sequence of protein |
length range | Peptide length range parameters |
charge range | Charge state range parameters |
enzyme | Enzyme used for cleavage |
missed cleave | Number of missed cleavages |
fixed mods | List of fixed modifications applied to protein |
differential mod | Differential modification applied to peptides |
peptides | 1xN array of peptide ids e.g. 1-15 |
m/z array | 2xN array of m/z ranges for analysis [[unmod m/z, ...],[mod m/z, ...]]
|
charge array | 1xN array of peptide charges |
rt array | 2xN array of rt ranges for analysis [[unmod rt, ...],[mod rt, ...]]
|
areas | 2xNxM array of area values from analysis [[unmod area, ...],[mod area, ...], ...]
|
fractional mod | NxM array of fractional modification values from analysis |
treatment | Nested list with indices for data files grouped by treatment [[#, ...],[#, ...]]
|
pdb file | PDB file associated with project |
This work by Jedd Bellamy-Carter is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.