Skip to content

Issues: jinworks/CellChat

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

233 Open 53 Closed
233 Open 53 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Problem merging two different Seurat objects and creating a CellChat object. Result obtained: 0 signaling genes.
#301 opened Jan 24, 2025 by Humph18
How to merge biological replicates and do comparison analysis?
#300 opened Jan 19, 2025 by kiwipeel
How to use our own DEG results ın comparison analysis?
#299 opened Jan 19, 2025 by kiwipeel
Error of netVisual_bubble in "Identify dysfunctional signaling by using differential expression analysis"
#298 opened Jan 17, 2025 by hjames1
'computeCellDistance' is not an exported object from 'namespace:CellChat'
#297 opened Jan 17, 2025 by ZhuoyangYu-PUMC
Identify the up-regulated and down-regulated signaling ligand-receptor pairs
#296 opened Jan 14, 2025 by tumorscholar
Identify dysfunctional signaling by using differential expression analysis
#295 opened Jan 13, 2025 by tumorscholar
Spot size
#294 opened Jan 13, 2025 by AlbertoFabbri93
Bug Report: order should contain names of all sectors.
#293 opened Jan 13, 2025 by lidd77
1
Wrong conversion factor for CosMx
#292 opened Jan 13, 2025 by AlbertoFabbri93
Analysis of a TMA
#291 opened Jan 10, 2025 by AlbertoFabbri93
Found more than one class "dist" in cache
#290 opened Jan 10, 2025 by AlbertoFabbri93
Bug: the return data( prob ) from the function netVisual_bubble is not same with "cellchat@net[["prob"]]"
#289 opened Jan 10, 2025 by lidd77
Missing interactions
#287 opened Jan 6, 2025 by sgsayson
Need help for the cofactor part
#286 opened Jan 1, 2025 by Mnew1288
devtools::install_github("jinworks/CellChat")
#285 opened Dec 30, 2024 by kly-plap
Issues using CellChat for Rat
#284 opened Dec 27, 2024 by shiave
Error of netVisual_bubble plotting
#281 opened Dec 21, 2024 by jiangxiuhan0310
devtools::install_github("jinworks/CellChat")
#280 opened Dec 20, 2024 by chenzhe-tj
Excluding communications
#279 opened Dec 19, 2024 by samguttr
Different color of the same signal when plot all signals vs one signal in bubble plot
#278 opened Dec 17, 2024 by Chrisdoan9
3
netVisual_heatmap for certain pathways on merged object enhancement New feature or request
#276 opened Dec 16, 2024 by JaneChik
2
Error when use default CellChatDB
#275 opened Dec 14, 2024 by Mollyx06
1
Minor suggestion on spatialFeaturePlot()
#274 opened Dec 12, 2024 by mvfki
1
Data exported from rankNet do not correspond to the plot info
#273 opened Dec 12, 2024 by carolgirardi
2
ProTip! Type g i on any issue or pull request to go back to the issue listing page.