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support for parallel by preloading data #84

support for parallel by preloading data

support for parallel by preloading data #84

Re-run triggered November 17, 2023 11:38
Status Failure
Total duration 37m 24s
Artifacts 2

check-bioc.yml

on: pull_request
Matrix: build-check
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15 errors and 56 warnings
windows-latest (devel)
Running examples in 'ensembldb-Ex.R' failed
windows-latest (devel)
Running examples in 'ensembldb-Ex.R' failed
windows-latest (devel)
Test failures
windows-latest (devel)
R CMD check found ERRORs
windows-latest (devel)
Process completed with exit code 1.
ubuntu-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
package or namespace load failed for ‘GenomeInfoDb’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
macOS-latest (devel)
package or namespace load failed for ‘GenomeInfoDb’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
macOS-latest (devel)
--- re-building ‘coordinate-mapping-use-cases.Rmd’ using rmarkdown
macOS-latest (devel)
processing vignette 'coordinate-mapping-use-cases.Rmd' failed with diagnostics:
macOS-latest (devel)
processing vignette 'coordinate-mapping.Rmd' failed with diagnostics:
macOS-latest (devel)
processing vignette 'ensembldb.Rmd' failed with diagnostics:
macOS-latest (devel)
Vignette re-building failed.
macOS-latest (devel)
Build process failed
macOS-latest (devel)
Process completed with exit code 1.
windows-latest (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.4:
windows-latest (devel)
Undocumented arguments in Rd file 'proteinToTranscript.Rd'
windows-latest (devel)
1 genomic region(s) could not be mapped to a transcript; hint: see ?seqlevelsStyle if you used UCSC chromosome names
windows-latest (devel)
1 genomic region(s) could not be mapped to a transcript; hint: see ?seqlevelsStyle if you used UCSC chromosome names
windows-latest (devel)
Undocumented arguments in Rd file 'proteinToTranscript.Rd'
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.4:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.4:
ubuntu-latest (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
macOS-latest (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
Label 23002 at (1) defined but not used [-Wunused-label]
macOS-latest (devel)
Label 23001 at (1) defined but not used [-Wunused-label]
macOS-latest (devel)
Label 23009 at (1) defined but not used [-Wunused-label]
macOS-latest (devel)
Label 23019 at (1) defined but not used [-Wunused-label]
macOS-latest (devel)
Label 23005 at (1) defined but not used [-Wunused-label]
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
macOS-latest (devel)
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Artifacts

Produced during runtime
Name Size
Linux-biocversion-devel-r-devel-results Expired
19.2 MB
Windows-biocversion-devel-r-devel-results Expired
18.9 MB