R-CMD-check-bioc

support for parallel by preloading data #84

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9 errors and 34 warnings

package or namespace load failed for ‘GenomeInfoDb’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):

package or namespace load failed for ‘GenomeInfoDb’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):

--- re-building ‘coordinate-mapping-use-cases.Rmd’ using rmarkdown

processing vignette 'coordinate-mapping-use-cases.Rmd' failed with diagnostics:

processing vignette 'coordinate-mapping.Rmd' failed with diagnostics:

processing vignette 'ensembldb.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:

Label 23002 at (1) defined but not used [-Wunused-label]

Label 23001 at (1) defined but not used [-Wunused-label]

Label 23009 at (1) defined but not used [-Wunused-label]

Label 23019 at (1) defined but not used [-Wunused-label]

Label 23005 at (1) defined but not used [-Wunused-label]

unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:

No files were found with the provided path: check. No artifacts will be uploaded.

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