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Releases: malariagen/malariagen-data-python

v13.3.0

07 Oct 14:14
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Full Changelog: v13.2.1...v13.3.0

v13.2.1

24 Sep 13:10
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What's Changed

  • Further work on scalability for large biallelic genotype data computations by @alimanfoo in #626

Full Changelog: v13.2.0...v13.2.1

v13.2.0

23 Sep 23:04
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What's Changed

  • Handle chunks parameter given as a size in memory; improve default chunks by @alimanfoo in #622
  • Random error when performing tests by @jonbrenas in #619
  • Fix center and zoom map parameters to allow int or float values by @leehart in #625
  • Set auto_pan False for marker popup in plot_frequencies_map_markers() by @leehart in #624
  • Improve performance when accessing biallelic SNP calls by @alimanfoo in #623

Full Changelog: v13.1.0...v13.2.0

v13.1.0

20 Sep 14:28
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What's Changed

  • Add parameters to the Anopheles pca function to allow better handling of outliers by @alimanfoo in #616
  • Support fractions for max_missing_an and min_minor_ac parameters when accessing biallelic SNPs by @alimanfoo in #617

Full Changelog: v13.0.4...v13.1.0

v13.0.4

20 Sep 08:22
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Full Changelog: v13.0.3...v13.0.4

v13.0.3

17 Sep 12:01
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What's Changed

  • Upgrade scikit-allel minimum version 1.3.13 to resolve issues with running large PCAs on a distributed cluster by @alimanfoo in #605

Full Changelog: v13.0.2...v13.0.3

v13.0.2

16 Sep 17:36
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What's Changed

  • Upgrade scikit-allel to resolve issues running large PCAs on a distributed cluster by @alimanfoo in #603

Full Changelog: v13.0.1...v13.0.2

v13.0.1

16 Sep 14:23
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What's Changed

  • Handle missing CNV DRCs in similar way to missing CNV HMM by @leehart in #599

Full Changelog: v13.0.0...v13.0.1

v13.0.0

02 Sep 16:17
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Release Notes

Python 3.9 no longer supported

Please note that Python 3.9 is no longer supported from this release.

What's Changed

  • Drop support for Python 3.9, add support for numpy 2.x by @alimanfoo in #590
  • Update GCS bucket to use single-region as default by @ahernank in #593

Full Changelog: v12.0.1...v13.0.0

v12.0.1

29 Aug 11:01
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Full Changelog: v12.0.0...v12.0.1