Releases: malariagen/malariagen-data-python
Releases · malariagen/malariagen-data-python
v8.5.0
What's Changed
- Maintenance 2024-01-08 by @alimanfoo in #494
- Refactor G123 by @alimanfoo in #495
Full Changelog: v8.4.0...v8.5.0
v8.4.0
What's Changed
- Improve G123 and H12 performance by @alimanfoo in #493
Full Changelog: v8.3.0...v8.4.0
v8.3.0
What's Changed
- Refactor Anopheles IGV by @alimanfoo in #483
- Misc maintenance 2023-12-19 by @alimanfoo in #487
- Refactor handling of virtual contigs by @alimanfoo in #489
- Refactor SNP frequencies by @alimanfoo in #490
Full Changelog: v8.2.0...v8.3.0
v8.2.0
What's Changed
- Anopheles refactor PCA functions by @alimanfoo in #481
Full Changelog: v8.1.0...v8.2.0
v8.1.0
v8.0.1
v8.0.0
What's Changed
- Pass through render_mode when plotting a dendrogram by @alimanfoo in #453
- Update switcher.json by @leehart in #452
- Add some spinners; tweak progress by @alimanfoo in #462
- Improve performance applying site filters to SNP calls by @alimanfoo in #464
- Improve performance of dendrogram plotting and saving results to the cache by @alimanfoo in #465
- Remove dependency on jupyter-dash by @alimanfoo in #467
- Biallelic SNP calls and diplotypes by @alimanfoo in #468
- Biallelic pairwise distances and neighbour joining trees by @alimanfoo in #470
Full Changelog: v7.15.0...v8.0.0
v7.15.0
What's Changed
- Update switcher.json by @leehart in #447
- Add pairwise fst functions by @KellyLBennett in #419
- Improve performance of haplotype clustering by @alimanfoo in #450
Full Changelog: v7.14.1...v7.15.0
v7.14.1
v7.14.0
What's Changed
- Update Af1 cohort refs in notebooks, tests by @leehart in #426
- Add API docs by @leehart in #423
- Pin cohorts_analysis in tests, notebooks by @leehart in #428
- Update README.md re tagged docs by @leehart in #429
- Add test for sample sets with no phasing data by @ahernank in #433
- Add
study_id
&study_url
to general metadata by @ahernank in #430 - Fix test for sample sets with no phasing data by @ahernank in #434
- Delete init character on bash examples -
README.md
by @ahernank in #431
Full Changelog: v7.13.0...v7.14.0