Papers

Kmer-counting

• kmerind2: Optimizing high performance distributed memory parallel hash tables for DNA k-mer counting SC 2018
• kmerind BCB 2016
• Benchmark study of k-mer counting methods GigaScience 2018
• Gerbil Algorithms for Molecular Biology 2017
• KMC3 Bioinformatics 2017
• MSPKmerCounter 2015
• KMC2 Bioinformatics 2015
• KMC BMC Bioinformatics 2013
• Memory Efficient Minimum Substring Partitioning VLDB 2013
• Jellyfish Bioinformatics 2011

Hash tables / hashing

• Concurrent Hash Tables: Fast and General(?)! TOPC 2019
• Cuckoo++ ANCS 2018
• Horton Tables USENIX ATC 2016
• Scaling Up Clustered Network Appliances with ScaleBricks SIGCOMM 2015
• CuckooSwitch CoNEXT 2013
• CPHASH: A Cache-Partitioned Hash Table PPoPP 2012
• Hopscotch Hashing 2008

Key-value stores

• MICA: A Holistic Approach to Fast In-Memory Key-Value Storage NSDI 2014

Other

• Evaluation of intel 3D-xpoint NVDIMM technology for memory-intensive genomic workloads MEMSYS 2019

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