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Useful links
Harishankar Vishwanathan edited this page Jul 11, 2020
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- Memory Deep Dive
- Maximizing System x and ThinkServer Performance with a Balanced Memory Configuration
- SIMDCompressionAndIntersection
- Hardware Prefetcher Control
- Intel Intrinsics Guide
- Huge pages lwn. part 1: Introduction, part 2: Interfaces
- Enabling 1GB Huge Pages
- Linux Hugepages
- How fast is getline in C++?
- xxHash + benchmarks against other hash algorithms
- A new fast hash table in response to Google’s new fast hash table
- Non-blocking hashtables with open addressing (Jellyfish's hashtable)
- Khash: generic hash table
- Minimizers
- Reverse Complement Calculator
- How To Split One Big FASTQ File Into Multiple Files
- alexpreynolds/kmer-counter : A very basic kmer counter
- How To Efficiently Parse A Huge Fastq File?
- FASTQ files
- Heng Li's FASTQ parsing comparison
- FASTQ Format Specification
- What is the most compact data structure for canonical k-mers with the fastest lookup time?