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Pull requests: monarch-initiative/monarch-ingest

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Pull requests list

strip version numbers from ENSEMBL gene IDs in Panther ingest, plus a test
#627 by kevinschaper was merged Feb 14, 2025 Loading…
Remove biogrid (which is coming in via a modular ingest now)
#626 by kevinschaper was merged Feb 13, 2025 Loading…
Refactor bgee ingest
#625 by iQuxLE was merged Feb 3, 2025 Loading…
2
splitting apart intersection-symbol IDs in bgee ingest
#620 by iQuxLE was merged Jan 27, 2025 Loading…
6
add missing (possible) phenio node plain text list
#618 by kevinschaper was merged Jan 14, 2025 Loading…
get monarch-app schema from maxo-ui branch
#617 by kevinschaper was merged Jan 14, 2025 Loading…
Add duckdb sql to generate parquet reports
#615 by kevinschaper was merged Dec 13, 2024 Loading…
Add ZFIN orthology ingest
#614 by kevinschaper was merged Dec 12, 2024 Loading…
Map XenBase GenePage orthology records to XB-GENE for each Xenopus species
#613 by kevinschaper was merged Dec 12, 2024 Loading…
phenio, kghub-downloader, xenbase, biogrid updates
#612 by kevinschaper was merged Nov 28, 2024 Loading…
Add species context qualifier, update closurizer
#609 by kevinschaper was merged Nov 19, 2024 Loading…
Add maxo ingest edges to ingests.yaml
#608 by kevinschaper was merged Nov 15, 2024 Loading…
update to move go annotations to modularized version
#607 by AO33 was merged Nov 15, 2024 Loading…
Remove non modular hpoa
#606 by kevinschaper was merged Oct 16, 2024 Loading…
Bring in modular hpoa
#605 by kevinschaper was merged Oct 16, 2024 Loading…
Bring ncbi gene nodes in from modular ingest
#604 by kevinschaper was merged Oct 14, 2024 Loading…
Populate publications for GO annotation ingest, plus update tests & doc to match
#603 by kevinschaper was merged Oct 14, 2024 Loading…
1
Add missing function call
#602 by ptgolden was merged Oct 14, 2024 Loading…
Updates phenio.db association population to gene & disease phenotype associations
#601 by kevinschaper was merged Oct 14, 2024 Loading…
Populate type for HGNC & Alliance gene nodes
#599 by kevinschaper was merged Sep 10, 2024 Loading…
1
4
Removed taxon-labels map requirement from hgnc gene ingest.
#598 by DnlRKorn was merged Aug 23, 2024 Loading…
1
3
Repair zeroes in phenotype.hpoa, update PKS
#595 by kevinschaper was merged Aug 12, 2024 Loading…
Get output from modular ingests before merge in Jenkins job
#593 by glass-ships was closed Oct 14, 2024 Loading…
@glass-ships
1
Use duckdb for jsonl conversion to fit into memory
#591 by kevinschaper was merged Jul 1, 2024 Loading…
Add modular genotype & variant ingests
#590 by kevinschaper was merged Jun 12, 2024 Loading…
2
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