Update DOSDP template and SPARQL qc documentation (#8123)

Co-authored-by: sabrinatoro <[email protected]>
monarch-initiative · Sep 16, 2024 · c4e9c7b · c4e9c7b
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Showing 4 changed files with 22 additions and 10 deletions.
diff --git a/docs/editors-guide/quality-control-tests.md b/docs/editors-guide/quality-control-tests.md
@@ -18,17 +18,29 @@ prefix mondo: <http://purl.obolibrary.org/obo/mondo#>
 
 SELECT DISTINCT ?entity ?property ?value WHERE
 {
-  VALUES ?property { <http://purl.obolibrary.org/obo/mondo#rare> }
-  ?entity <http://www.geneontology.org/formats/oboInOwl#inSubset> ?property .
+  VALUES ?value { 
+    <http://purl.obolibrary.org/obo/mondo#rare> 
+    <http://purl.obolibrary.org/obo/mondo#nord_rare>
+    <http://purl.obolibrary.org/obo/mondo#orphanet_rare>
+    <http://purl.obolibrary.org/obo/mondo#gard_rare>
+    <http://purl.obolibrary.org/obo/mondo#inferred_rare>
+    <http://purl.obolibrary.org/obo/mondo#mondo_rare>
+  }
+  VALUES ?property { 
+    <http://www.geneontology.org/formats/oboInOwl#inSubset>
+  }
+  ?entity ?property ?value .
   ?entity rdfs:subClassOf* <http://purl.obolibrary.org/obo/MONDO_0005583>
- FILTER NOT EXISTS {
+  
+  FILTER NOT EXISTS {
     ?entity owl:deprecated "true"^^xsd:boolean
   }
-   FILTER NOT EXISTS {
-      ?entity mondo:excluded_from_qc_check mondoSparqlQcMondo:qc-animal-disease-rare.sparql .
-   }
+  
+  FILTER NOT EXISTS {
+    ?entity mondo:excluded_from_qc_check mondoSparqlQcMondo:qc-animal-disease-rare.sparql .
+  }
+ 
  FILTER( !isBlank(?entity) && STRSTARTS(str(?entity), "http://purl.obolibrary.org/obo/MONDO_"))
-  BIND("Animal disease in Rare subset" as ?value)
 }
 
 ```

diff --git a/src/patterns/pattern-merged.owl b/src/patterns/pattern-merged.owl
@@ -10,7 +10,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/mondo-pattern.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/releases/2024-08-23/mondo-pattern.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/releases/2024-08-29/mondo-pattern.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/patterns/pattern-with-imports.owl b/src/patterns/pattern-with-imports.owl
@@ -10,7 +10,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/mondo-pattern.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/releases/2024-08-23/mondo-pattern.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/releases/2024-08-29/mondo-pattern.owl"/>
     </owl:Ontology>
 
 

diff --git a/src/patterns/pattern.owl b/src/patterns/pattern.owl
@@ -10,7 +10,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/mondo/patterns/pattern.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/releases/2024-08-23/mondo-pattern.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/mondo/releases/2024-08-29/mondo-pattern.owl"/>
     </owl:Ontology>