Skip to content

Issues: mskcc/smile-server

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

78 Open 942 Closed
78 Open 942 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

major cleanup - neo4j db version and java version. upgrade MetaDB Server Development z_Neo4j Persistence Library Development
#1312 opened Nov 6, 2024 by ao508
[dashboard] Display historical sample metadata Dashboard Development
#1311 opened Nov 6, 2024 by ao508
1
Update the certs of SMILE dashboard (expired on Nov 6)
#1310 opened Nov 6, 2024 by qu8n
1
[neo4j/java update] Address any remaining deprecation warnings in SMILE server codebase MetaDB Server Development Paused z_Neo4j Persistence Library Development
#1309 opened Nov 6, 2024 by ao508
[neo4j/java update] Confirm all web service endpoints work MetaDB Server Development z_Neo4j Persistence Library Development
#1308 opened Nov 6, 2024 by ao508
1
[neo4j/java update] Upgrade database on SMILE PROD MetaDB Server Development z_Neo4j Persistence Library Development
#1307 opened Nov 6, 2024 by ao508
1
[neo4j/java update] Test end-to-end workflow in SMILE DEV MetaDB Server Development z_Neo4j Persistence Library Development
#1306 opened Nov 6, 2024 by ao508
1
[neo4j/java update] Make new db dump from production database MetaDB Server Development z_Neo4j Persistence Library Development
#1305 opened Nov 6, 2024 by ao508
1
DMP/CVR fetcher not publishing all clinical samples to SMILE?
#1303 opened Oct 31, 2024 by ao508
1
Migrate Requests page to use a direct Neo4j query instead of OGM Dashboard Development
#1299 opened Oct 23, 2024 by qu8n
1
Migrate Cohorts page to use a direct Neo4j query instead of OGM Dashboard Development
#1298 opened Oct 23, 2024 by qu8n
1
[label generator] Confirm (or fix) nucleic acid counter is derived on a per-sample basis, not per-PATIENT Paused
#1296 opened Oct 18, 2024 by ao508
[label generator] Check if a sample already exists with a certain CMO label before assigning label
#1293 opened Oct 9, 2024 by ao508
1
Migrate Patients page to use a direct Neo4j query instead of OGM Dashboard Development
#1292 opened Oct 8, 2024 by qu8n
Revert additional CMO legacy labels shared by Anne Marie that weren't caught in the first round of fixes
#1289 opened Oct 2, 2024 by ao508
1
request-filter: ignore IGO samples with specific (erroneous) IGO ID patterns
#1277 opened Sep 19, 2024 by ao508
1
Migrate Neo4j from v4.4.23 --> v5.19.0 Epic MetaDB Server Development z_Neo4j Persistence Library Development
#1276 opened Sep 13, 2024 by ao508
5 tasks
3
SMILE-CMO sample labels follow up items
#1272 opened Sep 4, 2024 by ao508
Move 12-245 Part A/C consent status to patient-level metadata MetaDB Server Development
#1271 opened Sep 4, 2024 by ao508
1
Enable filtering by date range for the Import Date column on Requests page Dashboard Development
#1229 opened Jul 18, 2024 by qu8n
1
JULY 2024: Disaster Recovery Test Paused
#1213 opened Jul 1, 2024 by ao508
Add new pub-sub topic for dbGap updates dbGaP NATS Server Administration
#1209 opened Jun 26, 2024 by ao508
1
Add message handler in SMILE server for incoming dbGap sample updates. dbGaP MetaDB Server Development
#1208 opened Jun 26, 2024 by ao508
Make dbGap info editable on SMILE dashboard (and push update to SMILE) Dashboard Development dbGaP
#1207 opened Jun 26, 2024 by ao508
Backfill existing dbGap sample data. dbGaP
#1206 opened Jun 26, 2024 by ao508
ProTip! Find all open issues with in progress development work with linked:pr.