Add clades 24H, 24I #455
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name: CI | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
workflow_dispatch: | |
jobs: | |
test-cram: | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
# Login shell is required to include changes by conda init bash. | |
shell: bash -l -eo pipefail {0} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
python-version: "3.9" | |
miniforge-version: latest | |
channels: conda-forge,bioconda | |
- name: Install Cram | |
run: python3 -m pip install cram | |
- name: Install pandas and tsv-utils | |
run: mamba install "pandas>=1.0.0,<2.2.0" "tsv-utils" "pango_aliasor>=0.3.0" | |
- name: Run Cram tests | |
run: cram --shell=/bin/bash tests/ |