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Add IDR analysis

feature-requestRequest to add new functionalityRequest to add new functionality

Status: Open.

#87 In nf-core/chipseq;

· drpatelh opened on May 30, 2019

Merged biological replicates

Status: Open.

#213 In nf-core/chipseq;

· ryanmboileau opened on May 3, 2021

Output bigwigs with macs2 p-value signal for every base-pair

feature-requestRequest to add new functionalityRequest to add new functionality

Status: Open.

#251 In nf-core/chipseq;

· Al-Murphy opened on Feb 3, 2022

Find test dataset where PRESEQ doesn't fail

enhancement

Status: Open.

#276 In nf-core/chipseq;

· drpatelh opened on May 9, 2022

Implementation of Nucleosome and Protein Occupancy analysis

feature-requestRequest to add new functionalityRequest to add new functionality

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#289 In nf-core/chipseq;

· snardeli opened on Jul 27, 2022

Get rid of checksamplesheet.py and switch to nf-schema

enhancement

Status: Open.

#403 In nf-core/chipseq;

· JoseEspinosa opened on Jul 19, 2024

Add --only_step options

enhancement

Status: Open.

#337 In nf-core/chipseq;

· IStevant opened on Mar 8, 2023

Spike ins normalization

enhancement

Status: Open.

#321 In nf-core/chipseq;

· EmanuelSoda opened on Oct 28, 2022

Move the KHMER_UNIQUEKMERS logic to prepare_genome

enhancement

Status: Open.

#416 In nf-core/chipseq;

· JoseEspinosa opened on Oct 1, 2024

Refactor local modules to use an conda environment yml file and not ping modules directly

enhancement

Status: Open.

#417 In nf-core/chipseq;

· JoseEspinosa opened on Oct 1, 2024

Enable the use of CSI bam index

enhancement

Status: Open.

#454 In nf-core/chipseq;

· JoseEspinosa opened on Mar 12, 2025

Make skip_preseq the default option

enhancement

Status: Open.

#456 In nf-core/chipseq;

· JoseEspinosa opened on Mar 13, 2025