Remove the gpt input

CHANGELOG.md

@@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Add module to classify samples by clonality ([#178](https://github.com/nf-core/crisprseq/pull/178))
 - Add DrugZ, a module for chemogenetic interaction ([#168](https://github.com/nf-core/crisprseq/pull/168))
 - Add Hitselection, a module for subsetting more likely true positives for KO screen based on the protein protein interaction ([#191](https://github.com/nf-core/crisprseq/pull/191))
+- Make the use of gene essentiality module more user friendly and readable in the code ([#192](https://github.com/nf-core/crisprseq/pull/192))
 
 ### Fixed
 

workflows/crisprseq_screening.nf

@@ -18,7 +18,6 @@ include { MAGECK_FLUTEMLE                              } from '../modules/local/
 include { MAGECK_FLUTEMLE as MAGECK_FLUTEMLE_CONTRASTS } from '../modules/local/mageck/flutemle'
 include { MAGECK_FLUTEMLE as MAGECK_FLUTEMLE_DAY0      } from '../modules/local/mageck/flutemle'
 include { VENNDIAGRAM                                  } from '../modules/local/venndiagram'
-include { PREPARE_GPT_INPUT                            } from '../modules/local/prepare_gpt_input'
 // nf-core modules
 include { FASTQC                                       } from '../modules/nf-core/fastqc/main'
 include { CUTADAPT as CUTADAPT_THREE_PRIME             } from '../modules/nf-core/cutadapt/main'