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MAGeCK MLE set as a default #98

Closed
wants to merge 19 commits into from
Closed

MAGeCK MLE set as a default #98

wants to merge 19 commits into from

Commits on Nov 14, 2023

  1. Bump version

    @LaurenceKuhl
    LaurenceKuhl committed Nov 14, 2023
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Commits on Nov 17, 2023

  1. update all nf-core modules

    @mirpedrol
    mirpedrol committed Nov 17, 2023
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  2. do not zip cluster files to read them with groovy

    @mirpedrol
    mirpedrol committed Nov 17, 2023
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  3. Update nextflow.config

    @mirpedrol
    mirpedrol authored Nov 17, 2023
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  4. Merge pull request nf-core#91 from LaurenceKuhl/bump2.2.0 

    Bump2.2.0
    @mirpedrol
    mirpedrol authored Nov 17, 2023
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  5. Merge branch 'dev' into update-modules

    @mirpedrol
    mirpedrol authored Nov 17, 2023
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  6. update changelog

    @mirpedrol
    mirpedrol committed Nov 17, 2023
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  7. Merge pull request nf-core#92 from mirpedrol/update-modules 

    update all nf-core modules
    @mirpedrol
    mirpedrol authored Nov 17, 2023
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Commits on Nov 21, 2023

  1. first try at fix paired end2

    @LaurenceKuhl
    LaurenceKuhl committed Nov 21, 2023
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Commits on Nov 22, 2023

  1. Fix paired-end

    @LaurenceKuhl
    LaurenceKuhl committed Nov 22, 2023
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  2. Fix paired end

    @LaurenceKuhl
    LaurenceKuhl committed Nov 22, 2023
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Commits on Nov 23, 2023

  1. Merge branch 'dev' into paired-end

    @LaurenceKuhl
    LaurenceKuhl authored Nov 23, 2023
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Commits on Dec 5, 2023

  1. Add paired-end testing

    @LaurenceKuhl
    LaurenceKuhl committed Dec 5, 2023
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  2. Add test

    @LaurenceKuhl
    LaurenceKuhl committed Dec 5, 2023
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Commits on Dec 6, 2023

  1. Remove required input

    @LaurenceKuhl
    LaurenceKuhl committed Dec 6, 2023
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  2. nextflow config add the test paired end

    @LaurenceKuhl
    LaurenceKuhl committed Dec 6, 2023
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Commits on Dec 7, 2023

  1. Remove crisprcleanr from paired end testing

    @LaurenceKuhl
    LaurenceKuhl committed Dec 7, 2023
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  2. Merge pull request nf-core#94 from LaurenceKuhl/paired-end 

    Paired end bug fix
    @LaurenceKuhl
    LaurenceKuhl authored Dec 7, 2023
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Commits on Dec 12, 2023

  1. Change the workflow to take MAGeCK MLE as a default and add tests

    @LaurenceKuhl
    LaurenceKuhl committed Dec 12, 2023
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