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Add chopper and nanoq options for longread preprocessing #1753

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Add chopper and nanoq options for longread preprocessing

Add chopper and nanoq options for longread preprocessing #1753

Run time

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Job Run time
Run single test to checkm due to database download
16m 7s
Run workflow profile (test_host_rm)
13m 15s
Run pipeline with test data (23.04.0)
18m 7s
Run workflow profile (test_hybrid)
19m 0s
Run pipeline with test data (latest-everything)
17m 52s
Run workflow profile (test_hybrid_host_rm)
17m 42s
Run workflow profile (test_busco_auto)
18m 48s
Run workflow profile (test_ancient_dna)
15m 29s
Run workflow profile (test_adapterremoval)
18m 16s
Run workflow profile (test_binrefinement)
15m 19s
Run workflow profile (test_virus_identification)
7m 30s
Run workflow profile (test_single_end)
3m 18s
Run workflow profile (test_concoct)
7m 41s
3h 8m 24s