Skip to content
nf-core CI

Factor out preprocessing #2748

Sign in to view logs

Factor out preprocessing

Factor out preprocessing #2748

Re-run triggered July 17, 2024 14:02
@pinin4fjordspinin4fjords
#1342
factor_out_preprocessing
Status Success
Total duration 11m 44s
Artifacts –

ci.yml

on: pull_request
Check for changes
22s
Check for changes
Matrix: test
confirm-pass
0s
confirm-pass
Fit to window
Zoom out
Zoom in

Annotations

32 warnings
tests/skip_qc.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/skip_trimming.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/star_rsem.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/salmon.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/hisat2.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/featurecounts_group_type.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/remove_ribo_rna.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/min_mapped_reads.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/default.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/kallisto.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/skip_qc.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/skip_trimming.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/salmon.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/star_rsem.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/remove_ribo_rna.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/featurecounts_group_type.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/hisat2.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/min_mapped_reads.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/kallisto.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/default.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/