[skip ci] Dev -> Master for 3.15.0 #2749
pinin4fjordsAnnotations
4 errors and 189 warnings
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tests/skip_qc.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: invalid json response body at https://api.github.com/repos/nf-core/rnaseq/check-runs reason: Unexpected end of JSON input)
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modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
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modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
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confirm-pass
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modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-23.04
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modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-23.04
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modules/nf-core/kallisto/index/tests/main.nf.test docker NF-23.04
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modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-23.04
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modules/local/rsem_merge_counts/tests/main.nf.test docker NF-23.04
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modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-23.04
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modules/nf-core/hisat2/build/tests/main.nf.test docker NF-23.04
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modules/nf-core/salmon/index/tests/main.nf.test docker NF-23.04
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modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-23.04
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modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-23.04
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modules/local/gtf_filter/tests/main.nf.test docker NF-23.04
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modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-23.04
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modules/local/gtf2bed/tests/main.nf.test docker NF-23.04
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modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-23.04
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modules/nf-core/samtools/index/tests/main.nf.test docker NF-23.04
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modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-23.04
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modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-23.04
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modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-23.04
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modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-23.04
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modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-23.04
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modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-23.04
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modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-23.04
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modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-23.04
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modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-23.04
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modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-23.04
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modules/nf-core/samtools/sort/tests/main.nf.test docker NF-23.04
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modules/nf-core/gunzip/tests/main.nf.test docker NF-23.04
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modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-23.04
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modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-23.04
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modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-23.04
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modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-23.04
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modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-23.04
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modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-23.04
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modules/nf-core/cat/fastq/tests/main.nf.test docker NF-23.04
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modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-23.04
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modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-23.04
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modules/local/deseq2_qc/tests/main.nf.test docker NF-23.04
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modules/nf-core/dupradar/tests/main.nf.test docker NF-23.04
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modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-23.04
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modules/nf-core/gffread/tests/main.nf.test docker NF-23.04
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modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-23.04
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-23.04
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-23.04
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modules/nf-core/untar/tests/main.nf.test docker NF-23.04
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modules/nf-core/fq/subsample/tests/main.nf.test docker NF-23.04
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modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-23.04
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modules/nf-core/sortmerna/tests/main.nf.test docker NF-23.04
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modules/nf-core/umitools/extract/tests/main.nf.test docker NF-23.04
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subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
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subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
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subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-23.04
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subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-23.04
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subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
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modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
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modules/nf-core/trimgalore/tests/main.nf.test docker NF-23.04
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subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-23.04
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modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04
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subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-23.04
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subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-23.04
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subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-23.04
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subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/hisat2/align/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/salmon/quant/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/fastp/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything
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modules/local/rsem_merge_counts/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/gtf_filter/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/align_star/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/cat/fastq/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/gtf2bed/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything
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modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything
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modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything
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modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything
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modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything
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modules/local/deseq2_qc/tests/main.nf.test docker NF-latest-everything
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modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-latest-everything
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modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything
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modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
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subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
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modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything
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modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything
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modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
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modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
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subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/salmon/quant/tests/main.nf.test docker NF-latest-everything
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subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/kallisto.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/salmon.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/align_star/tests/main.nf.test docker NF-latest-everything
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subworkflows/local/prepare_genome/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything
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modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything
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modules/nf-core/star/align/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/star_align_igenomes/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything
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tests/salmon.nf.test docker NF-latest-everything
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tests/hisat2.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/kallisto.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_qc.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/local/star_align_igenomes/tests/main.nf.test docker NF-latest-everything
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tests/min_mapped_reads.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_trimming.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/default.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/star_rsem.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/featurecounts_group_type.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_qc.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_qc.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/min_mapped_reads.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/skip_trimming.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/default.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/star_rsem.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/featurecounts_group_type.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/remove_ribo_rna.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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tests/remove_ribo_rna.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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