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[skip ci] Dev -> Master for 3.15.0 #2749

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[skip ci] Dev -> Master for 3.15.0

[skip ci] Dev -> Master for 3.15.0 #2749

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49s
modules/nf-core/star/align/tests/main.nf.test docker NF-latest-everything
8m 51s
subworkflows/local/align_star/tests/main.nf.test docker NF-latest-everything
2m 20s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything
4m 29s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-latest-everything
1m 32s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything
1m 17s
tests/default.nf.test docker NF-latest-everything
10m 55s
modules/local/deseq2_qc/tests/main.nf.test docker NF-latest-everything
1m 18s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-latest-everything
1m 3s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-latest-everything
1m 3s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-latest-everything
22m 28s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-latest-everything
1m 11s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-latest-everything
30s
modules/nf-core/dupradar/tests/main.nf.test docker NF-latest-everything
1m 32s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything
1m 24s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-latest-everything
2m 54s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-latest-everything
54s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-latest-everything
39s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-latest-everything
1m 11s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-latest-everything
59s
tests/star_rsem.nf.test docker NF-latest-everything
10m 45s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything
55s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-latest-everything
55s
modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything
44s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything
42s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-latest-everything
1m 0s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-latest-everything
58s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-latest-everything
1m 12s
tests/remove_ribo_rna.nf.test docker NF-latest-everything
15m 38s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-latest-everything
59s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-latest-everything
59s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-latest-everything
2m 12s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything
1m 13s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
56s
tests/hisat2.nf.test docker NF-latest-everything
8m 59s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-latest-everything
1m 3s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-latest-everything
2m 8s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
29s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-latest-everything
1m 29s
tests/min_mapped_reads.nf.test docker NF-latest-everything
10m 26s
tests/featurecounts_group_type.nf.test docker NF-latest-everything
11m 8s
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything
2m 7s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-latest-everything
1m 14s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything
46s
modules/nf-core/gffread/tests/main.nf.test docker NF-latest-everything
1m 31s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-latest-everything
1m 12s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-latest-everything
46s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-latest-everything
1m 17s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything
3m 34s
modules/local/gtf_filter/tests/main.nf.test docker NF-latest-everything
48s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-latest-everything
45s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-latest-everything
40s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
1m 4s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything
6m 23s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-latest-everything
1m 3s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-latest-everything
52s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything
1m 54s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-latest-everything
58s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-latest-everything
1m 0s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-latest-everything
2m 16s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-latest-everything
39s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-latest-everything
1m 16s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-latest-everything
1m 42s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-latest-everything
8m 31s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-latest-everything
1m 8s
modules/nf-core/fastp/tests/main.nf.test docker NF-latest-everything
3m 5s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-latest-everything
1m 16s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-latest-everything
1m 25s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-latest-everything
58s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-latest-everything
49s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-latest-everything
1m 26s
tests/salmon.nf.test docker NF-latest-everything
5m 4s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
57s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-latest-everything
51s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-latest-everything
2m 4s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-latest-everything
1m 34s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-latest-everything
2m 31s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything
1m 24s
modules/nf-core/gunzip/tests/main.nf.test docker NF-latest-everything
1m 9s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
56s
tests/kallisto.nf.test docker NF-latest-everything
5m 13s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-latest-everything
2m 3s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-latest-everything
1m 30s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-latest-everything
57s
tests/skip_qc.nf.test docker NF-latest-everything
8m 35s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-latest-everything
1m 5s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-latest-everything
47s
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
2m 0s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-latest-everything
1m 4s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-latest-everything
33s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-latest-everything
4m 23s
modules/local/gtf2bed/tests/main.nf.test docker NF-latest-everything
45s
tests/skip_trimming.nf.test docker NF-latest-everything
10m 37s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything
48s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-latest-everything
2m 30s
modules/nf-core/star/align/tests/main.nf.test docker NF-23.04
8m 20s
subworkflows/local/align_star/tests/main.nf.test docker NF-23.04
2m 20s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-23.04
4m 38s
modules/nf-core/subread/featurecounts/tests/main.nf.test docker NF-23.04
1m 39s
modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-23.04
1m 26s
tests/default.nf.test docker NF-23.04
11m 4s
modules/local/deseq2_qc/tests/main.nf.test docker NF-23.04
1m 26s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-23.04
57s
modules/nf-core/rseqc/bamstat/tests/main.nf.test docker NF-23.04
1m 1s
modules/nf-core/samtools/stats/tests/main.nf.test docker NF-23.04
21m 43s
modules/nf-core/samtools/index/tests/main.nf.test docker NF-23.04
58s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialistion.workflow.nf.test docker NF-23.04
38s
modules/nf-core/dupradar/tests/main.nf.test docker NF-23.04
1m 26s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-23.04
1m 48s
modules/nf-core/hisat2/align/tests/main.nf.test docker NF-23.04
2m 22s
modules/nf-core/ucsc/bedclip/tests/main.nf.test docker NF-23.04
53s
modules/nf-core/custom/getchromsizes/tests/main.nf.test docker NF-23.04
56s
modules/nf-core/rseqc/inferexperiment/tests/main.nf.test docker NF-23.04
1m 6s
subworkflows/nf-core/bam_stats_samtools/tests/main.nf.test docker NF-23.04
1m 14s
tests/star_rsem.nf.test docker NF-23.04
10m 50s
subworkflows/nf-core/bedgraph_bedclip_bedgraphtobigwig/tests/main.nf.test docker NF-23.04
47s
subworkflows/nf-core/bam_sort_stats_samtools/tests/main.nf.test docker NF-23.04
44s
modules/nf-core/untar/tests/main.nf.test docker NF-23.04
43s
subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-23.04
40s
modules/nf-core/rseqc/readdistribution/tests/main.nf.test docker NF-23.04
1m 7s
modules/nf-core/rseqc/junctionsaturation/tests/main.nf.test docker NF-23.04
1m 7s
modules/nf-core/rseqc/readduplication/tests/main.nf.test docker NF-23.04
1m 13s
tests/remove_ribo_rna.nf.test docker NF-23.04
16m 4s
modules/nf-core/rseqc/tin/tests/main.nf.test docker NF-23.04
57s
modules/nf-core/rsem/preparereference/tests/main.nf.test docker NF-23.04
1m 0s
modules/nf-core/rsem/calculateexpression/tests/main.nf.test docker NF-23.04
2m 20s
modules/nf-core/trimgalore/tests/main.nf.test docker NF-23.04
1m 25s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
1m 6s
tests/hisat2.nf.test docker NF-23.04
8m 39s
modules/nf-core/hisat2/build/tests/main.nf.test docker NF-23.04
50s
modules/nf-core/tximeta/tximport/tests/main.nf.test docker NF-23.04
2m 4s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
42s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-23.04
1m 19s
tests/min_mapped_reads.nf.test docker NF-23.04
10m 28s
tests/featurecounts_group_type.nf.test docker NF-23.04
11m 11s
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04
2m 4s
modules/local/star_genomegenerate_igenomes/tests/main.nf.test docker NF-23.04
1m 15s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-23.04
53s
modules/nf-core/gffread/tests/main.nf.test docker NF-23.04
1m 27s
modules/nf-core/rseqc/junctionannotation/tests/main.nf.test docker NF-23.04
1m 9s
modules/local/multiqc_custom_biotype/tests/main.nf.test docker NF-23.04
51s
modules/nf-core/samtools/sort/tests/main.nf.test docker NF-23.04
1m 5s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-23.04
3m 15s
modules/local/gtf_filter/tests/main.nf.test docker NF-23.04
57s
modules/nf-core/samtools/idxstats/tests/main.nf.test docker NF-23.04
33s
modules/local/rsem_merge_counts/tests/main.nf.test docker NF-23.04
51s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
1m 16s
subworkflows/local/prepare_genome/tests/main.nf.test docker NF-23.04
6m 16s
modules/nf-core/umitools/prepareforrsem/tests/main.nf.test docker NF-23.04
1m 21s
subworkflows/nf-core/fastq_subsample_fq_salmon/tests/main.nf.test docker NF-23.04
56s
subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-23.04
1m 50s
modules/nf-core/hisat2/extractsplicesites/tests/main.nf.test docker NF-23.04
51s
subworkflows/nf-core/bam_rseqc/tests/main.nf.test docker NF-23.04
1m 12s
subworkflows/local/quantify_rsem/tests/main.nf.test docker NF-23.04
2m 7s
modules/local/preprocess_transcripts_fasta_gencode/tests/main.nf.test docker NF-23.04
58s
modules/nf-core/stringtie/stringtie/tests/main.nf.test docker NF-23.04
1m 23s
modules/nf-core/fq/subsample/tests/main.nf.test docker NF-23.04
1m 40s
modules/local/star_align_igenomes/tests/main.nf.test docker NF-23.04
8m 33s
modules/nf-core/bedtools/genomecov/tests/main.nf.test docker NF-23.04
59s
modules/nf-core/fastp/tests/main.nf.test docker NF-23.04
2m 55s
modules/nf-core/rseqc/innerdistance/tests/main.nf.test docker NF-23.04
1m 3s
subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test docker NF-23.04
1m 11s
modules/nf-core/kallisto/quant/tests/main.nf.test docker NF-23.04
46s
modules/nf-core/samtools/flagstat/tests/main.nf.test docker NF-23.04
56s
subworkflows/nf-core/fastq_align_hisat2/tests/main.nf.test docker NF-23.04
1m 7s
tests/salmon.nf.test docker NF-23.04
5m 1s
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
47s
modules/nf-core/custom/catadditionalfasta/tests/main.nf.test docker NF-23.04
57s
modules/nf-core/bbmap/bbsplit/tests/main.nf.test docker NF-23.04
1m 32s
modules/nf-core/preseq/lcextrap/tests/main.nf.test docker NF-23.04
1m 7s
subworkflows/nf-core/quantify_pseudo_alignment/tests/main.nf.test docker NF-23.04
2m 43s
subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-23.04
1m 48s
modules/nf-core/gunzip/tests/main.nf.test docker NF-23.04
1m 4s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
45s
tests/kallisto.nf.test docker NF-23.04
4m 59s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-23.04
1m 43s
modules/nf-core/picard/markduplicates/tests/main.nf.test docker NF-23.04
1m 25s
modules/nf-core/salmon/index/tests/main.nf.test docker NF-23.04
51s
tests/skip_qc.nf.test docker NF-23.04
8m 48s
modules/nf-core/custom/tx2gene/tests/main.nf.test docker NF-23.04
52s
modules/nf-core/kallisto/index/tests/main.nf.test docker NF-23.04
44s
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
1m 52s
modules/nf-core/qualimap/rnaseq/tests/main.nf.test docker NF-23.04
1m 1s
modules/nf-core/ucsc/bedgraphtobigwig/tests/main.nf.test docker NF-23.04
43s
modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test docker NF-23.04
4m 23s
modules/local/gtf2bed/tests/main.nf.test docker NF-23.04
58s
tests/skip_trimming.nf.test docker NF-23.04
10m 46s
subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-23.04
47s
modules/nf-core/salmon/quant/tests/main.nf.test docker NF-23.04
2m 40s
confirm-pass
1s
8h 25m 2s