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setting snpeff directory name to lowercase in tower.yml #1572

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setting snpeff directory name to lowercase in tower.yml #1572

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Commits on May 7, 2024

  1. Merge pull request nf-core#1484 from nf-core/dev 

    Release 3.4.2
    @maxulysse
    maxulysse committed May 7, 2024
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Commits on May 21, 2024

  1. Adding support for spring-compressed fastq.gz as input

    @asp8200
    asp8200 committed May 21, 2024
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  2. Improve error msg

    @asp8200
    asp8200 committed May 21, 2024
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Commits on May 22, 2024

  1. Adding test config

    @asp8200
    asp8200 committed May 22, 2024
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  2. Aligning profile-name and config-name for test alignment_from_fastq_a… 

    …nd_spring
    @asp8200
    asp8200 committed May 22, 2024
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  3. Improving names of variables and module instances

    @asp8200
    asp8200 committed May 22, 2024
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  4. pleasing the linter

    @asp8200
    asp8200 committed May 22, 2024
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Commits on May 27, 2024

  1. Merge branch 'nf-core:master' into spring_II

    @asp8200
    asp8200 committed May 27, 2024
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  2. Merge branch 'dev' into spring_II

    @asp8200
    asp8200 committed May 27, 2024
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  3. setup test of alignment from bam,fastq and spring in one input-csv

    @asp8200
    asp8200 committed May 27, 2024
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  4. Updating changelog

    @asp8200
    asp8200 committed May 27, 2024
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Commits on May 29, 2024

  1. Adding pytest alignment_from_everything

    @asp8200
    asp8200 committed May 29, 2024
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  2. fix typo

    @asp8200
    asp8200 committed May 29, 2024
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  3. prettier

    @asp8200
    asp8200 committed May 29, 2024
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Commits on May 30, 2024

  1. Disabling default publishing of fastq.gz-files from SPRING_DECOMPRESS

    @asp8200
    asp8200 committed May 30, 2024
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Commits on Jun 10, 2024

  1. Reduce code-duplication by introducing function addReadgroupToMeta

    @asp8200
    asp8200 committed Jun 10, 2024
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  2. Merge branch 'dev' into spring_II

    @asp8200
    asp8200 committed Jun 10, 2024
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  3. Adding some docs on fastq.gz.spring-files as input

    @asp8200
    asp8200 committed Jun 10, 2024
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  4. prettier

    @asp8200
    asp8200 committed Jun 10, 2024
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Commits on Jun 17, 2024

  1. Update workflows/sarek/main.nf 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @asp8200 @maxulysse
    asp8200 and maxulysse committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. Very minor update of usage.md

    @asp8200
    asp8200 committed Jun 18, 2024
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  2. variable names all lowercase

    @asp8200
    asp8200 committed Jun 18, 2024
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  3. Merge branch 'spring_II' of https://github.com/asp8200/sarek into spr… 

    …ing_II
    @asp8200
    asp8200 committed Jun 18, 2024
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  4. Remove duplication

    @maxulysse
    maxulysse committed Jun 18, 2024
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  5. setting snpeff directory name to lowercase in tower.yml

    @cmatKhan
    cmatKhan committed Jun 18, 2024
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Commits on Jun 19, 2024

  1. Merge pull request nf-core#1534 from asp8200/spring_II 

    Adding support for fastq.gz.spring-files as input
    @asp8200
    asp8200 committed Jun 19, 2024
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  2. Update CHANGELOG.md

    @maxulysse
    maxulysse committed Jun 19, 2024
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  3. Merge pull request nf-core#1570 from nf-core/maxulysse-patch-2 

    Remove duplication
    @maxulysse
    maxulysse committed Jun 19, 2024
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  4. setting snpeff directory name to lowercase in tower.yml

    @cmatKhan
    cmatKhan committed Jun 19, 2024
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  5. adding pull 1572 to changelog fixed section

    @cmatKhan
    cmatKhan committed Jun 19, 2024
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  6. Merge branch 'fix_tower_snpeff' of https://github.com/cmatKhan/sarek … 

    …into fix_tower_snpeff

merge with remote
    @cmatKhan
    cmatKhan committed Jun 19, 2024
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