add tests for normalization and concat + normalize #1815
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.0.2. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
maxulysse
changed the title
maxulysse
commented
Mar 3, 2025
maxulysse
commented
Mar 3, 2025
| branches: [dev] | ||
| branches: | ||
| - dev | ||
| - dev_normalization #TODO: remove this when merging normalization |
maxulysse
commented
Mar 3, 2025
| withName: 'ADD_INFO_TO_VCF'{ | ||
| ext.when = { params.concatenate_vcfs } | ||
| withName: 'ADD_INFO_TO_VCF' { | ||
| ext.when = { params.concatenate_vcfs || params.normalize_vcfs } |
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This is where our issue was
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what happens if you only normalize? no info needed?
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yeah, I should not commit and push before closing computer... Sorry about that |
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Thanks @FriederikeHanssen |
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PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).