The Blue Brain Project

All

362 repositories

NeuroMorphoVis
Public
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.
visualization morphologies neurons blender-addon neural-modeling mesh-reconstruction soma-reconstruction morphology-analysis morphology-visualization media-production
Python
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GNU General Public License v3.0
•28•130•56•1•Updated Feb 6, 2025Feb 6, 2025
open-data-registry
Public
A registry of publicly available datasets on AWS
Python
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Apache License 2.0
•953•1•0•0•Updated Feb 5, 2025Feb 5, 2025
luigi-tools
Public
Extra tools to work with the Luigi library
luigi python
Python
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Apache License 2.0
•2•9•0•0•Updated Feb 4, 2025Feb 4, 2025
eFEL
Public
Electrophys Feature Extraction Library
neuroscience computational-neuroscience neurons electrophysiology python
Python
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Other
•40•69•21•2•Updated Jan 28, 2025Jan 28, 2025
BluePyEfe
Public
BluePyEfe: Blue Brain Python E-feature extraction
Python
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Other
•15•16•2•2•Updated Jan 26, 2025Jan 26, 2025
GLUT1_DS_model
Public
Jupyter Notebook
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MIT License
•1•1•0•0•Updated Jan 25, 2025Jan 25, 2025
AstroVascPy
Public
Vasculature blood flow computation and impact of astrocytic endfeet on vessels
experiment simulation circuit bloodflow
Python
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Apache License 2.0
•4•11•0•2•Updated Jan 23, 2025Jan 23, 2025
accounting-service
Public
Python
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Apache License 2.0
•1•1•0•0•Updated Jan 23, 2025Jan 23, 2025
nexus-web
Public
Nexus Web is the interface of Blue Brain Nexus
react redux nodejs javascript typescript storybook server-side-rendering nexus
TypeScript
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Apache License 2.0
•9•18•0•2•Updated Jan 21, 2025Jan 21, 2025
spacktainers
Public
Automated container building via AWS Codebuild, based on Spack
docker spack containerization
Dockerfile
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Apache License 2.0
•1•2•1•3•Updated Jan 21, 2025Jan 21, 2025
sbo-qa-automation
Public
Python
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Apache License 2.0
•1•1•0•0•Updated Jan 21, 2025Jan 21, 2025
nexus
Public
Blue Brain Nexus - A knowledge graph for data-driven science
scala nexus provenance knowledge-graph shacl
Scala
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Apache License 2.0
•74•281•264•0•Updated Jan 17, 2025Jan 17, 2025
neuroagent
Public
LLM agent made to communicate with different neuroscience related tools
Python
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Apache License 2.0
•2•9•0•0•Updated Jan 13, 2025Jan 13, 2025
connectome-manipulator
Public
A connectome manipulation framework for SONATA circuits
experiment build circuit visualize
Python
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Apache License 2.0
•3•3•1•0•Updated Jan 13, 2025Jan 13, 2025
BluePyEModel
Public
Blue Brain Python Electrical Modeling Pipeline
python workflow build simulation neuroscience modelling parameter analyse neuron optimisation
Python
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Other
•8•6•0•0•Updated Jan 13, 2025Jan 13, 2025
neurodamus
Public
A BBP Simulation Control application for NEURON
simulation cellular neuron-simulations brain
Python
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Apache License 2.0
•9•10•8•0•Updated Jan 10, 2025Jan 10, 2025
HighFive
Public
HighFive - Header-only C++ HDF5 interface
C++
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Boost Software License 1.0
•162•706•47•0•Updated Jan 9, 2025Jan 9, 2025
Currentscape
Public
Currentscape is a Python tool enabling scientists to easily plot the currents in electrical neuron models. The code is based on the paper Alonso and Marder, 2019.
analyze emodel
Python
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Other
•6•8•0•1•Updated Jan 8, 2025Jan 8, 2025
Ultraliser
Public
Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.
morphology mesh neurons volume neuron skeletons skeletonization astrocyte vasculature
C++
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GNU General Public License v3.0
•5•27•28•0•Updated Jan 3, 2025Jan 3, 2025
spack
Public
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
Python
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Other
•2.3k•9•2•41•Updated Dec 27, 2024Dec 27, 2024
platform-docs
Public
Apache License 2.0
•1•2•0•0•Updated Dec 19, 2024Dec 19, 2024
Molsys-transcriptomic-atlas
Public
This repository provides code to generate a transcriptomic atlas and its mapping to TME types.
Jupyter Notebook
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Apache License 2.0
•1•1•0•0•Updated Dec 19, 2024Dec 19, 2024
synthesis-workflow
Public
Luigi workflow for neuronal synthesis
Python
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Apache License 2.0
•1•1•0•1•Updated Dec 18, 2024Dec 18, 2024
nexus-forge
Public
Building and Using Knowledge Graphs made easy
data-science rdf knowledge-graph json-ld data-management shacl knowledge-engineering knowledgegraph
Python
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GNU Lesser General Public License v3.0
•20•43•49•7•Updated Dec 18, 2024Dec 18, 2024
region-grower
Public
Neuronal synthesis in atlas-based regions
Python
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Apache License 2.0
•1•1•0•0•Updated Dec 18, 2024Dec 18, 2024
nmodl-references
Public
nmodl references
C++
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Apache License 2.0
•1•1•0•0•Updated Dec 17, 2024Dec 17, 2024
nmodl
Public
Code Generation Framework For NEURON MODeling Language
hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
C++
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Apache License 2.0
•16•57•167•21•Updated Dec 17, 2024Dec 17, 2024
cortexetl
Public
Jupyter Notebook
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Apache License 2.0
•1•2•0•0•Updated Dec 16, 2024Dec 16, 2024
core-web-app
Public
Open Brain Platform
neuroscience simulation-neuroscience
TypeScript
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Apache License 2.0
•1•4•0•0•Updated Dec 16, 2024Dec 16, 2024
functionalizer
Public
Create a functional connectome from physical connections between cells
neuroscience in-silico connectome-generation
Python
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Apache License 2.0
•1•1•6•1•Updated Dec 16, 2024Dec 16, 2024