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    418 repositories

    • NEDSS-Modernization

      Public
      Java
      •3•18•0•5•Updated Jan 6, 2025Jan 6, 2025

    • forecasttools

      Public
      R tools for short-term forecasting
      R
      •
      Apache License 2.0
      •2•3•6•0•Updated Jan 6, 2025Jan 6, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •3•6•0•0•Updated Jan 6, 2025Jan 6, 2025

    • trusted-intermediary

      Public
      Bringing together healthcare providers by reducing the connection burden.
      Groovy
      •
      Apache License 2.0
      •6•11•154•3•Updated Jan 6, 2025Jan 6, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •19•61•10•1•Updated Jan 6, 2025Jan 6, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •2•2•0•0•Updated Jan 5, 2025Jan 5, 2025

    • cfa_azure

      Public
      pythonazureazure-batchazure-container-registryazure-blob-storage
      Python
      •
      Apache License 2.0
      •3•9•3•3•Updated Jan 5, 2025Jan 5, 2025

    • data-exchange-processing-status

      Public
      The Public Health Data Observability (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.
      Kotlin
      •
      Apache License 2.0
      •1•2•1•2•Updated Jan 5, 2025Jan 5, 2025

    • tostadas

      Public
      🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
      pythondockermetadatabioinformaticsrna-seqpipelinenextflowgeneticsazuresequencing
      Python
      •
      Apache License 2.0
      •9•27•18•0•Updated Jan 5, 2025Jan 5, 2025

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •41•74•1.2k•126•Updated Jan 5, 2025Jan 5, 2025

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      reactjsterraformgraphqlspring-boot
      Java
      •
      Creative Commons Zero v1.0 Universal
      •54•58•384•20•Updated Jan 5, 2025Jan 5, 2025

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •1•5•46•4•Updated Jan 4, 2025Jan 4, 2025

    • ixa

      Public
      Rust
      •
      Apache License 2.0
      •1•13•15•3•Updated Jan 4, 2025Jan 4, 2025

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •1•4•39•5•Updated Jan 4, 2025Jan 4, 2025

    • DynODE

      Public
      CDC/CFA/Predict/Scenarios ODE Modeling Framework
      Python
      •
      Apache License 2.0
      •1•5•31•2•Updated Jan 3, 2025Jan 3, 2025

    • phdi

      Public
      fhir
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •15•35•226•10•Updated Jan 3, 2025Jan 3, 2025

    • devsecops--import-projects

      Public
      Importing GitHub Actions into existing projects
      Shell
      •
      Apache License 2.0
      •1•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • NEDSS-DataIngestion

      Public
      Data Ingestion for Modernization of NEDSS Project by Enquizit
      Java
      •
      Apache License 2.0
      •3•6•0•1•Updated Jan 3, 2025Jan 3, 2025

    • reportstream-sftp-ingestion

      Public
      Go
      •
      Apache License 2.0
      •1•5•0•0•Updated Jan 3, 2025Jan 3, 2025

    • cfa-ngm-widget

      Public
      Python
      •
      Apache License 2.0
      •1•0•11•3•Updated Jan 3, 2025Jan 3, 2025

    • cfa-rt-postprocessing

      Public
      Python
      •
      Apache License 2.0
      •1•1•8•2•Updated Jan 3, 2025Jan 3, 2025

    • dibbs-site

      Public
      JavaScript
      •2•1•0•9•Updated Jan 3, 2025Jan 3, 2025

    • RecordLinker

      Public
      The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      pythonsqlalchemyfastapi
      Python
      •
      Apache License 2.0
      •1•3•19•2•Updated Jan 3, 2025Jan 3, 2025

    • clean-genes

      Public
      A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.
      data-sciencebioinformaticsfastadata-normalizationdata-cleaningsequence-alignmentsequence-analysissequence-annotationncirdncird-id
      Rust
      •
      Apache License 2.0
      •1•1•5•0•Updated Jan 3, 2025Jan 3, 2025

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •21•36•0•5•Updated Jan 3, 2025Jan 3, 2025

    • ReportVision

      Public
      Intelligent Data Workflow Automation
      TypeScript
      •
      Apache License 2.0
      •3•1•38•2•Updated Jan 3, 2025Jan 3, 2025

    • covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.
      R
      •
      Apache License 2.0
      •11•9•11•3•Updated Jan 3, 2025Jan 3, 2025

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •2•2•0•5•Updated Jan 3, 2025Jan 3, 2025

    • aquascope

      Public
      Nextflow
      •
      MIT License
      •11•17•7•0•Updated Jan 3, 2025Jan 3, 2025

    • dibbs-vm

      Public
      HCL
      •
      Creative Commons Zero v1.0 Universal
      •1•0•12•1•Updated Jan 3, 2025Jan 3, 2025