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    14 repositories

    • ProteoformNetworks

      Public
      Tests to prove usefulness of proteoform networks
      Jupyter Notebook
      •
      Apache License 2.0
      •1•1•1•3•Updated Oct 18, 2023Oct 18, 2023

    • Networks

      Public
      Protein and proteoform interaction networks created from Pathways in Reactome.
      0•0•0•0•Updated May 18, 2023May 18, 2023

    • PathwayStructure

      Public
      Java
      •
      Apache License 2.0
      •0•1•0•0•Updated Apr 19, 2023Apr 19, 2023

    • PathwayMatcher

      Public
      PathwayMatcher is a free, open-source software to search for pathways related to a list of genes, proteins or proteoforms in Reactome.
      Java
      •
      Other
      •2•2•0•3•Updated Jun 4, 2021Jun 4, 2021

    • PathwayMatcher_Publication

      Public
      Source code, data files and figures for the PathwayMatcher manuscript.
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 27, 2020Mar 27, 2020

    • ProteoformNetworks_resources

      Public
      Data files and result tables for the project ProteoformNetworks, which compares the overlap between trait modules at gene and proteoform level.
      0•0•0•0•Updated Oct 2, 2019Oct 2, 2019

    • MappingFiles

      Public
      Tables create with Variant Effect Predictor (VEP) to map from genetic variants to gene names and Swiss Prot accessions.
      Apache License 2.0
      •0•0•0•0•Updated Apr 4, 2019Apr 4, 2019

    • PathwayMatcher_Dev

      Public archive
      PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
      developmentpathway-analysisproteoformspathwaysreactomebiological-networks
      Java
      •
      Apache License 2.0
      •1•6•0•0•Updated Mar 4, 2019Mar 4, 2019

    • Methods

      Public archive
      Java implementation of Methods to search and analyse pathways
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 28, 2019Feb 28, 2019

    • Model

      Public archive
      Set of classes to represent the objects related to pathway analysis
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 28, 2019Feb 28, 2019

    • Extractor

      Public archive
      Tool for creating static mapping files from multiples data types to the reactions and pathways in the Reactome graph database.
      Java
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 27, 2019Feb 27, 2019

    • CodeStyle

      Public
      Guidelines for coding style across our projects.
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 26, 2018Sep 26, 2018

    • AnalysisGuidelines

      Public
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Sep 16, 2018Sep 16, 2018

    • PathFinder

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 10, 2018Sep 10, 2018