Repositories list

• Cassiopeia_LFQ

  Public
  R script to perform standard analysis steps for label-free proteomics data

  2•1•0•0•Updated May 21, 2024May 21, 2024

• SiteToProteinNormalization_in_MultiplexProteomics

  Public
  Workflow to perform unbiased site-to-protein normalization in multiplex proteomics by accounting for ratio compression effects due to ion interference

  algorithmproteomicspost-translational-modification+ 2proteomics-data-analysisisobaric-labeling

  R

  •

  Other

  •1•0•0•0•Updated May 17, 2024May 17, 2024

• InterferenceModeling_in_MultiplexProteomics

  Public
  Workflow to perform interference modeling and interference correction for MS2-based multiplex proteomics data

  algorithmproteomicsproteomics-data-analysis+ 1isobaric-labeling

  R

  •

  Other

  •1•0•0•0•Updated May 17, 2024May 17, 2024

• perutz-ms-contaminants

  Public
  Central repository for organizing the custom FASTA contaminants files used in the Max Perutz MS Facility

  MIT License

  •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• Publication_Resources

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 18, 2023Dec 18, 2023