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@mpievolbio-scicomp Scientific Computing @ Max-Planck-Institute for Evolutionary Biology

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    60 repositories

    • 2024-11-18-MPIEvolBio

      Public
      Website repo for the Software Carpentries Workshop at Max Planck Institute for Evolutionary Biology, Nov. 18. - 22. 2024
      HTML
      •
      Other
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • reproapp

      Public
      Base infrastructure for apptainer development on binder
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • CxGviz

      Public
      Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
      HTML
      •
      MIT License
      •45•1•2•0•Updated Jul 23, 2024Jul 23, 2024

    • gahyparopt

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • Evolution-und-KI

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • PyTripalSerializer

      Public
      Serialize Tripal's JSON-LD API into RDF format
      Python
      •
      MIT License
      •0•0•6•1•Updated Jun 5, 2024Jun 5, 2024

    • python-template-package

      Public template
      This is a template project for a full fledged python package under the umbrella of MPI for Evolutionary Biology
      fillinme
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Mar 27, 2024Mar 27, 2024

    • 2024-03-18-MPIEvolBio

      Public
      Workshop Website for Software Carpentries Workshop at MPI Evolutionary Biology
      HTML
      •
      Other
      •1•0•0•0•Updated Mar 18, 2024Mar 18, 2024

    • nfdi4microbiota-knowledge-base

      Public
      The NFDI4Microbiota Knowledge Base
      CSS
      •
      Creative Commons Attribution 4.0 International
      •26•0•0•0•Updated Feb 14, 2024Feb 14, 2024

    • ontologies

      Public
      Ontologies developed in the Scientific Computing Unit at Max Planck Institute for Evolutionary Biology
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • omero-rdf

      Public
      A plugin for exporting RDF from OMERO
      Python
      •
      GNU General Public License v2.0
      •5•0•0•0•Updated Feb 8, 2024Feb 8, 2024

    • rarefan

      Public
      Scheme
      •
      MIT License
      •0•1•4•0•Updated Oct 11, 2023Oct 11, 2023

    • quickstatements_client

      Public
      A data model and client for QuickStatements (for Wikidata)
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • 2023-04-04-MPIEvolBio

      Public template
      Workshop repository for the Software Carpentry Workshop "Unix, Git, Programming and Plotting with Python" at MPI Evolutionary Biology
      HTML
      •
      Other
      •1•0•2•0•Updated Apr 3, 2023Apr 3, 2023

    • OBIS-CC

      Public
      Community contributions to the OpenBIS ELN/LIMS ecosystem
      MIT License
      •0•0•0•0•Updated Nov 21, 2022Nov 21, 2022

    • PyFPT

      Public
      Stochastic first-passage time (FPT) simulations using importance sampling.
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Sep 27, 2022Sep 27, 2022

    • python-novice-inflammation

      Public
      Programming with Python
      Python
      •
      Other
      •780•0•0•0•Updated Jul 29, 2022Jul 29, 2022

    • Design-simple-iCn3D-UI-for-middle-high-school-students

      Public
      MIT License
      •2•0•0•0•Updated Jul 11, 2022Jul 11, 2022

    • DeLTA_doc

      Public
      Documentation Retraining DeLTA 2.0
      0•0•0•0•Updated May 2, 2022May 2, 2022

    • GenomeFeatureFormatOntology

      Public
      An ontology to represent genome feature annotations in gff3 format.
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Mar 28, 2022Mar 28, 2022

    • Tensorflow-Neuroevolution

      Public
      Neuroevolution Framework for Tensorflow 2.x focusing on modularity and high-performance. Preimplements NEAT, DeepNEAT, CoDeepNEAT, etc.
      Python
      •
      Apache License 2.0
      •36•0•0•0•Updated Mar 12, 2022Mar 12, 2022

    • misic

      Public
      segmentation of rod-shaped bacteria
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Feb 10, 2022Feb 10, 2022

    • omero-scripts

      Public
      Core OMERO Scripts
      Python
      •32•0•0•0•Updated Jan 12, 2022Jan 12, 2022

    • ometa

      Public
      Community contributed scripts for metadata handling in omero-web
      Python
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Dec 21, 2021Dec 21, 2021

    • Magritte

      Public
      A modern software library for simulating radiation transport.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •12•0•0•0•Updated Dec 17, 2021Dec 17, 2021

    • obat

      Public
      Plugins for OMERO
      Python
      •
      GNU General Public License v2.0
      •52•3•1•0•Updated Dec 17, 2021Dec 17, 2021

    • diffexpr

      Public
      Porting DESeq2 and DEXSeq into python via rpy2
      Jupyter Notebook
      •
      MIT License
      •21•0•0•0•Updated Nov 30, 2021Nov 30, 2021

    • FakeData

      Public
      Detection of fabricated/falsified data using Brenford's law
      Jupyter Notebook
      •1•0•0•0•Updated Nov 19, 2021Nov 19, 2021

    • ImgSeg-Tools

      Public
      Helpful information about several image segmentation tools. Installation, usage, parameters
      0•0•0•0•Updated Nov 8, 2021Nov 8, 2021

    • chado-LD

      Public
      Linked data representations of the chado database schema
      MIT License
      •0•0•0•0•Updated Sep 19, 2021Sep 19, 2021