Repositories list

• pretzel-documentation-website

  Public
  Shell

  •1•0•2•2•Updated Dec 23, 2024Dec 23, 2024

• lamington

  Public
  Core Diversity Set Explorer

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• pretzel

  Public
  Javascript full-stack framework for Big Data visualisation and analysis

  javascriptopen-sourcedata-science+ 7emberjsexpressbioinformaticsbig-dataexpressjsdata-visualizationember

  JavaScript

  •

  GNU General Public License v3.0

  •13•44•144•8•Updated Dec 19, 2024Dec 19, 2024

• brioche

  Public
  Brioche is a bioinformatics pipeline for mapping markers to a given reference genome. brioche uses Nextflow, a domain-specific language (DSL) for defining workflows, as its workflow management tool. Brioche streamlines marker mapping to reference genomes through a Nextflow-powered pipeline.

  bioinformaticsgenomicsnextflow+ 5markersaggmapping-toolsgenebankbrioche

  R

  •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

• genolink

  Public
  Genolink is a middleware for integrating genotype databases and Genesys, reducing data redundancy, and enabling real-time data access and filtering across genomic platforms.

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• vcf-genotype-brapi

  Public
  Client and server functions to access genotype data from VCF via a custom web API and BrAPI

  JavaScript

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• pretzel-static-pages

  Public
  Static HTML Content for the landing page of the Pretzel project instance

  HTML

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• shortbread2

  Public
  Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.

  bioinformaticsgatkwgs+ 2ngs-pipelinenextflow-pipeline

  Perl

  •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• pretzel-input-generator

  Public
  Nextflow

  •

  GNU General Public License v3.0

  •0•0•9•0•Updated Oct 4, 2024Oct 4, 2024

• interval-bins

  Public
  binEvenLengthRound() : Calculate the bin size for even-sized bins to span the given interval. binBoundaries() : Generate an array of even-sized bins to span the given interval.

  JavaScript

  •0•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• ember-cli-multi-store-service

  Public
  JavaScript

  •

  MIT License

  •3•0•0•0•Updated May 29, 2024May 29, 2024

• child-process-progressive

  Public
  Wrap node child_process, implementing a progressive option for multiple data chunks sent via SSE.

  JavaScript

  •0•0•0•0•Updated May 27, 2024May 27, 2024

• germinate-brapi

  Public
  BrAPI implementation for Germinate

  Java

  •

  Apache License 2.0

  •2•0•0•0•Updated Apr 15, 2024Apr 15, 2024

• ember-split-view-modifier

  Public
  ember {{split-view}} element modifier

  JavaScript

  •

  MIT License

  •3•0•0•0•Updated Feb 18, 2024Feb 18, 2024

• AGG-priority-traits

  Public
  Data from the AGG's November 2023 Community of Practice meeting

  R

  •0•0•0•0•Updated Jan 19, 2024Jan 19, 2024

• pretzel-user-guide

  Public
  User guide for Pretzel

  Python

  •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

• ember-raf-scheduler

  Public
  Simple generic scheduler that wraps the Ember runloop and requestAnimationFrame

  JavaScript

  •

  MIT License

  •8•0•0•0•Updated Sep 9, 2023Sep 9, 2023

• germinate-server

  Public
  The generic plant genetic resources database

  Java

  •

  Apache License 2.0

  •2•0•0•0•Updated Apr 13, 2023Apr 13, 2023

• AVRIG-wheatbarley-40k

  Public
  Datasets related to the Infinium Wheat Barley 40K SNP chip co-developed by Agriculture Victoria and InterGrain

  0•0•0•0•Updated May 13, 2022May 13, 2022

• ember-jsoneditor

  Public
  Ember component to view, edit and format JSON.

  JavaScript

  •

  MIT License

  •18•0•0•0•Updated Feb 2, 2021Feb 2, 2021

• pretzel-wheat-agronomic-genes

  Public
  Curated list of agronomic genes of interest in wheat

  0•0•1•0•Updated Mar 23, 2020Mar 23, 2020

• pretzel-data

  Public
  Data structure for https://github.com/plantinformatics/pretzel

  GNU General Public License v3.0

  •2•0•2•0•Updated Apr 11, 2019Apr 11, 2019

• pretzel-application-note

  Public
  A repository for an application note about pretzel

  TeX

  •0•0•0•0•Updated Jan 11, 2019Jan 11, 2019

• pretzel-user-guide-old

  Public
  Pretzel User Guide

  0•0•2•0•Updated Nov 20, 2018Nov 20, 2018

• Durum_iSelect_90kSNP_GenotypeCalling

  Public
  Perl script for generating genotype calls for unrelated durum wheat samples assayed using the Illumina iSelect 90K SNP bead chip array

  Perl

  •0•0•0•0•Updated Aug 27, 2018Aug 27, 2018