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@pepperell-lab

Pepperell Lab

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  1. RGAPepPipe_CHTC RGAPepPipe_CHTC Public

    Forked from myoungblom/RGAPepPipe_MAY

    Updated versions of condor scripts for work on CHTC for RGAPepPipe using Docker containers

    Python 1

Repositories

Showing 10 of 28 repositories
  • CHTC_RNAseq_HTSeqCounts Public

    Updated versions of condor scripts for work on CHTC for RNAseq using Docker containers.

    pepperell-lab/CHTC_RNAseq_HTSeqCounts’s past year of commit activity
    Python 0 1 0 0 Updated Jan 10, 2025
  • CHTC_RNAseq_RSEM Public

    RNAseq pipeline that uses STAR and RSEM to produce normalized counts. Condor scripts written to be used on CHTC servers with Docker Containers.

    pepperell-lab/CHTC_RNAseq_RSEM’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 24, 2024
  • RGAPepPipe_CHTC Public Forked from myoungblom/RGAPepPipe_MAY

    Updated versions of condor scripts for work on CHTC for RGAPepPipe using Docker containers

    pepperell-lab/RGAPepPipe_CHTC’s past year of commit activity
    Python 1 3 0 0 Updated Oct 16, 2024
  • nano-RGA Public

    SNP calling for Nanopore data

    pepperell-lab/nano-RGA’s past year of commit activity
    Python 0 0 0 0 Updated Oct 8, 2024
  • cv-pangraph Public

    pangraph analysis of nanopore sequenced colony variants

    pepperell-lab/cv-pangraph’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 7, 2024
  • Mtb_COBS Public

    Scripts to estimate frequency of mutations identified in Contingencies in biofilm adaptation of Mycobacterium tuberculosis (Kernien & Youngblom et al. 2024) in a global dataset of M.tb genomes using a previously described method (Smith et al. 2022).

    pepperell-lab/Mtb_COBS’s past year of commit activity
    Python 0 0 0 0 Updated May 21, 2024
  • poolER Public Forked from topfm/poolER

    analysis of evolve and re-sequence populations

    pepperell-lab/poolER’s past year of commit activity
    Python 0 1 0 0 Updated May 21, 2024
  • selection-stats Public Forked from topfm/selection-stats
    pepperell-lab/selection-stats’s past year of commit activity
    Python 0 1 0 0 Updated Mar 25, 2024
  • mtb_ExpEvo_RNA Public Forked from myoungblom/mtb_ExpEvo_RNA

    Scripts for analysis and figures associated with the following publication: Adaptation of the Mycobacterium tuberculosis transcriptome to biofilm growth

    pepperell-lab/mtb_ExpEvo_RNA’s past year of commit activity
    R 0 MIT 1 0 0 Updated Dec 20, 2023
  • sapro_genomics Public Forked from myoungblom/sapro_genomics
    pepperell-lab/sapro_genomics’s past year of commit activity
    R 0 1 0 0 Updated May 29, 2023
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