GitHub - pepperell-lab/WH-BH: Within-host, Between-host Project

Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
BAMtoMPILEUP.py		BAMtoMPILEUP.py
NSoutliers.py		NSoutliers.py
README		README
annotateSummary.py		annotateSummary.py
annotateSummary.txt		annotateSummary.txt
calc_mean.R		calc_mean.R
combineSlidingWindows.py		combineSlidingWindows.py
crossRefDrugDB.py		crossRefDrugDB.py
filterSummary.py		filterSummary.py
makeSnpDicts.py		makeSnpDicts.py
makeSumMaster.py		makeSumMaster.py
mqBias.py		mqBias.py
takeSubsetNexus.ipy		takeSubsetNexus.ipy
variantQual.py		variantQual.py

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#These are scripts used for the paper "Diversity of Mycobacterium tuberculosis across evolutionary scales"

Within-host, Between-host Project

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