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Scripts pertaining to the in vitro manipulation project.
This script takes an mpileup file or any human readable file with genomic position in the second column, and a bed file specifying start and stop positions to be removed.
Usage:
genPPERemoval.py
This script automates a series of poPOOLation commands - subsampling, calculating pi, calculating theta.
Usage:
160727_subsampPiTheta.ipy (you will be prompted for user input) Prefix: Coverage: