PhoSin annotations

[chriscrsmith]

So far this includes only the annotations.py file. Waiting on #1514 to add PhoSin to catalog.

@andrewkern, how do we upload files to AWS? Currently the interval files are sitting here:

http://sesame.uoregon.edu/~chriscs/StdPopSim/Phocoena_sinus.mPhoSin1.pri.110_exons.tar.gz
http://sesame.uoregon.edu/~chriscs/StdPopSim/Phocoena_sinus.mPhoSin1.pri.110_CDS.tar.gz

[codecov]

Codecov Report

All modified lines are covered by tests ✅

Comparison is base (039df54) 99.85% compared to head (a8f3928) 99.85%.

❗ Current head a8f3928 differs from pull request most recent head 57034a6. Consider uploading reports for the commit 57034a6 to get more accurate results

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1520      +/-   ##
==========================================
- Coverage   99.85%   99.85%   -0.01%     
==========================================
  Files         127      121       -6     
  Lines        4260     4178      -82     
  Branches      591      588       -3     
==========================================
- Hits         4254     4172      -82     
  Misses          3        3              
  Partials        3        3              

see 8 files with indirect coverage changes

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[nspope]

i'm going to rerun the test suite, to see if #1532 actually worked (looks like all but one of the grid errored out with "conda environment not found")

[chriscrsmith]

Hey @nspope not sure if it's relevant but this won't pass the stdpopsim pytest until we get these files uploaded to AWS

[nspope]

that's fine-- just need to get the test suite to run in the first place! Which it seems they aren't, despite #1532

[nspope]

@chriscrsmith would you mind rebasing this onto main? I think I've fixed the CI issues, and want to check that the tests actually run now (regardless of whether they fail).

[chriscrsmith]

Hows that look, @nspope ? I see some tests running...

[nspope]

Seems to be working, thanks!

[andrewkern]

@chriscrsmith I think the correct way to do this is to actually to merge this PR and then run the annotation maintenance and it will automatically do the downloading etc.

anyone mind if I do that?

[andrewkern]

the annotations are now up on aws