Add Basespace 1.5.3 to images.toml (#90)

* Use version 1.5.3 for BaseSpace CLI and add to images.toml * add cpg-utils install to container run commands * Install cpg_workflows in BaseSpace image * Install BaseSpace CLI in current directory * Revert "Install BaseSpace CLI in current directory" This reverts commit 5580870. * add gcloud load basespace config to container setup * Linting * BaseSpace image remove gcloud commands from Dockerfile * Linting BaseSpace Dockerfile * Remove cpg_workflows from basespace image * Remove cpg_utils from Basespace image --------- Co-authored-by: Michael Franklin <[email protected]>
populationgenomics · Nov 16, 2023 · ff0dbd1 · ff0dbd1
1 parent be4c8e7
commit ff0dbd1
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diff --git a/images.toml b/images.toml
@@ -35,3 +35,4 @@ stripy = '4e393f921d15bfba8e3c2234b20c483c205ac295'
 gangstr = '2.5.0'
 hipstr = 'v0.6.2'
 bgt = 'v1.0'
+basespace = '1.5.3'
diff --git a/images/basespace/Dockerfile b/images/basespace/Dockerfile
@@ -1,6 +1,9 @@
 FROM australia-southeast1-docker.pkg.dev/analysis-runner/images/driver-base:1.4
 
+ARG VERSION=${VERSION:-1.5.3}
+
 RUN apt-get update && \
     mkdir $HOME/bin && \
-    wget "https://launch.basespace.illumina.com/CLI/latest/amd64-linux/bs" -O $HOME/bin/bs && \
-    chmod u+x $HOME/bin/bs
+    wget "https://launch.basespace.illumina.com/CLI/${VERSION}/amd64-linux/bs" -O $HOME/bin/bs && \
+    chmod u+x $HOME/bin/bs && \
+    mkdir $HOME/.basespace