using dataclass to retriev gvcf path from dictionary

populationgenomics · Jan 17, 2024 · 1037931 · 1037931
1 parent 52d7c3c
commit 1037931
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/scripts/add_nagim_gvcfs_to_tob_wgs_test_metamist.py b/scripts/add_nagim_gvcfs_to_tob_wgs_test_metamist.py
@@ -144,7 +144,8 @@ def main(project: str, project_id: int, sample_path_mappings: str, suffix: str):
     for participant in upserted_participants:
         for sample in participant['samples']:
             old_ext_id = sample['externalId'].removesuffix(f'-{suffix}')
-            gvcf_path = ext_id_to_row[old_ext_id][1]  # get gvcf path from dictionary
+            row_data = ext_id_to_row[old_ext_id]
+            gvcf_path = row_data.gvcf  # get gvcf path from dictionary
             AnalysisApi().create_analysis(
                 project,
                 Analysis(