swap back to full path on cli

populationgenomics · Nov 4, 2024 · 2335163 · 2335163
1 parent 37a6cbb
commit 2335163
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scripts/register_missing_combiner_analysis.py b/scripts/register_missing_combiner_analysis.py
@@ -9,7 +9,7 @@
 
 from hail.vds import read_vds
 
-from cpg_utils.hail_batch import config_retrieve, dataset_path, init_batch
+from cpg_utils.hail_batch import config_retrieve, init_batch
 from metamist.apis import AnalysisApi
 from metamist.models import Analysis, AnalysisStatus
 
@@ -23,7 +23,7 @@ def get_sg_ids(vds: str) -> list[str]:
     Returns:
         list[str]: A list of sequencing group IDs.
     """
-    return read_vds(dataset_path(vds)).variant_data.s.collect()
+    return read_vds(vds).variant_data.s.collect()
 
 
 def main(vds: str):