Merge pull request #632 from populationgenomics/dev

Release 6.5.1

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 6.5.0
+current_version = 6.5.1
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>[A-z0-9-]+)

api/server.py

@@ -20,7 +20,7 @@
 from api.settings import PROFILE_REQUESTS, SKIP_DATABASE_CONNECTION
 
 # This tag is automatically updated by bump2version
-_VERSION = '6.5.0'
+_VERSION = '6.5.1'
 
 logger = get_logger()
 

deploy/python/version.txt

@@ -1 +1 @@
-6.5.0
+6.5.1

scripts/create_test_subset.py

@@ -589,7 +589,7 @@ def transfer_participants(
 
     participants_to_transfer = []
     for participant in participant_data:
-        if participant['externalId'] in list(target_project_pid_map.keys()):
+        if participant['externalId'] in target_project_pid_map:
             # Participants with id field will be updated & those without will be inserted
             participant['id'] = target_project_pid_map[participant['externalId']]
         else:

scripts/parse_sample_file_map.py

@@ -35,7 +35,7 @@
     help='The metamist project to import manifest into',
 )
 @click.option('--default-sample-type', default='blood')
-@click.option('--default-sequence-type', default='wgs')
+@click.option('--default-sequencing-type', default='wgs')
 @click.option('--default-sequence-technology', default='short-read')
 @click.option(
     '--confirm', is_flag=True, help='Confirm with user input before updating server'

setup.py

@@ -19,7 +19,7 @@
 setup(
     name=PKG,
     # This tag is automatically updated by bump2version
-    version='6.5.0',
+    version='6.5.1',
     description='Python API for interacting with the Sample API system',
     long_description=readme,
     long_description_content_type='text/markdown',

web/package.json

@@ -1,6 +1,6 @@
 {
     "name": "metamist",
-    "version": "6.5.0",
+    "version": "6.5.1",
     "private": true,
     "dependencies": {
         "@apollo/client": "^3.7.3",