Fix delete project endpoint (#590)

Co-authored-by: Michael Franklin <[email protected]>
populationgenomics · Jan 2, 2024 · 6e4858e · 6e4858e
1 parent 9668f9e
commit 6e4858e
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Showing 2 changed files with 11 additions and 1 deletion.
diff --git a/db/python/connect.py b/db/python/connect.py
@@ -28,9 +28,9 @@
     'assay',
     'sequencing_group_assay',
     'analysis_sequencing_group',
+    'analysis_sample',
     'assay_external_id',
     'sequencing_group_external_id',
-    'analysis_sequencing_group',
     'family',
     'family_participant',
     'participant_phenotypes',

diff --git a/db/python/tables/project.py b/db/python/tables/project.py
@@ -389,6 +389,16 @@ async def delete_project_data(
     INNER JOIN sample ON sample.id = sg.sample_id
     WHERE sample.project = :project
 );
+DELETE FROM analysis_sample WHERE sample_id in (
+    SELECT s.id FROM sample s
+    WHERE s.project = :project
+);
+DELETE FROM analysis_sequencing_group WHERE analysis_id in (
+    SELECT id FROM analysis WHERE project = :project
+);
+DELETE FROM analysis_sample WHERE analysis_id in (
+    SELECT id FROM analysis WHERE project = :project
+);
 DELETE FROM assay WHERE sample_id in (SELECT id FROM sample WHERE project = :project);
 DELETE FROM sequencing_group WHERE sample_id IN (
     SELECT id FROM sample WHERE project = :project