think i need dataset path

populationgenomics · Nov 4, 2024 · d3b653b · d3b653b
1 parent 64b1020
commit d3b653b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/scripts/register_missing_combiner_analysis.py b/scripts/register_missing_combiner_analysis.py
@@ -10,7 +10,7 @@
 from hail.vds import read_vds
 
 from cpg_utils import to_path
-from cpg_utils.hail_batch import init_batch
+from cpg_utils.hail_batch import dataset_path, init_batch
 from metamist.apis import AnalysisApi
 from metamist.models import Analysis, AnalysisStatus
 
@@ -24,7 +24,7 @@ def get_sg_ids(vds: str) -> list[str]:
     Returns:
         list[str]: A list of sequencing group IDs.
     """
-    return read_vds(to_path(vds)).variant_data.s.collect()
+    return read_vds(to_path(dataset_path(vds))).variant_data.s.collect()
 
 
 def main(vds: str, dataset: str):