Code

Release#618

Code

Merged

vivbak merged 17 commits intomainpopulationgenomics/metamist:mainfrom devpopulationgenomics/metamist:devCopy head branch name to clipboardNov 21, 2023

+3,190-289

Commits

Commits on Nov 19, 2023

• Test that fails if warning is set to true and ValueError is raised

  michael-harper

  committed
  dd0e6f7

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• Added warning flag to ignore missing data when parsing

  michael-harper

  committed
  83f2174

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• Commented this out again for consistency with dev branch

  michael-harper

  committed
  cbd08af

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• .gitignore updated

  michael-harper

  committed
  9207b67

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• added warning_flag to cmd flags and updated doc string

  michael-harper

  committed
  b4a86a0

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• fixed linting issue

  michael-harper

  committed
  89c0058

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• Billing pre-release (#605)

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  milo-hyben

  and

  violetbrina

  authored
  bdb637d

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• removed a commented out bit of code

  michael-harper

  committed
  ebb5379

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Commits on Nov 20, 2023

• fixed testing error and renamed warning_flag to allow_missing_files to be more obvious

  michael-harper

  committed
  01c6139

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• added check for warning log in test_get_read_filenames_no_reads_pass as well as length of read_filenames. Also changed removed /venv in .gitignore file - probably best for a separate PR

  michael-harper

  committed
  778585d

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• removed unused imports

  michael-harper

  committed
  d85ba2d

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• Update scripts/parse_existing_cohort.py

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  michael-harper

  and

  vivbak

  authored
  44779bc

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• Update test/test_parse_existing_cohort.py

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  michael-harper

  and

  vivbak

  authored
  9f0909c

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• de-bumping metamist version

  michael-harper

  committed
  2aec9dc

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• Merge remote-tracking branch 'origin/update-existing-cohort-parser-with-skip-flag' into update-existing-cohort-parser-with-skip-flag

  michael-harper

  committed
  20af8c6

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• fixed linting issue

  michael-harper

  committed
  74b9031

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• Merge pull request #616 from populationgenomics/update-existing-cohort-parser-with-skip-flag

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  vivbak

  authored
  4422f3e

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