Enhanced Data Transfer Process with Assay File Inclusion #660
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…Needed to pass the 'project' variable through various function calls in order to provide copy_files_in_dict the correct project id to create paths to copy files to
vivbak
approved these changes
Jan 25, 2024
|
Have run this locally and it is working as expected 🙂 thanks @vivbak ! |
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Previously, when upserting assays the meta field was copied across without copying files present in this assay meta field. This field can contain raw
fastqfiles that would be necessary to align during a pipeline run.copy_files_in_dictis capable of iterating through a dictionary (such as theassay['meta']field) and creating new file locations in the test bucket based on file locations present in the assay meta.