* Add support for etl parser configuration

* Untested remap service-account to ID

* Small fix

* Add asserts + fix config

* Add type annotations and improve parser_name variable

* Move immediately instantiated clients to fix tests

* Fix random linting things

* Add new + refactor tests to reduce duplication

* Address review feedback

* Update metamist_infra version to 1.1.0

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Co-authored-by: Michael Franklin <[email protected]>

* Fix click overwriting param to None when not specified

* Fix whitespace after : for the linter

* Fix role description

* Fix import spacing

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Co-authored-by: Michael Franklin <[email protected]>

* Updating parsers with library type etc

* Add new sample map column defaults, update sg meta on RNA ingest

* Update parser column default, update rna sg meta, update parsing prints

* Change reference to 'sequence' to 'assay'

* Change reference to 'library_type' to 'sequencing_library'

* Change another reference to 'library_type' to 'sequencing_library'

* Add required fields for exomes, more tidying, use tabulate

* Add tabulate to requirements

* Fix parse_manifest return for tests, update script referencing group_assays fn

* Remove required exome fields, re-add default analysis status 'completed'

* Update parser testing with RNA examples

* Remove added external_family_id from ParsedParticipant class

* Refactor parser to use SequencingDefualts class

* Collapse sequencing defaults into new class

* Update setup.py and resolve merge conflicts

* isort linting

* Fix typehint for read and ref files function return

* Update SG meta endpoint to use PATCH, not GET

* Bump version: 6.7.0 → 6.8.0