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Point to GATK image with gCNV bugfix #707

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merged 1 commit into from
Apr 26, 2024
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MattWellie
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Not sure if this is a great idea...

See populationgenomics/images#137

This updates the gCNV standard workflow config to use the homebrewed version of the GATK sv-pipeline image with the updated version of a problemmatic script.

We can solve this by adding this change into the batch-specific config files, or getting a proper upstream fix in place. This is a stop-gap, and I'm not 💯% sure it needs to be in the main default.

@MattWellie MattWellie requested a review from cassimons April 26, 2024 02:15
@MattWellie MattWellie merged commit 6c27945 into main Apr 26, 2024
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@MattWellie MattWellie deleted the gcnv_image_override branch April 26, 2024 02:30
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