Apache Arrow is the universal columnar format and multi-language toolbox for fast data interchange and in-memory analytics

Convert HTML to PDF using Webkit (QtWebKit)

Xournal++ is a handwriting notetaking software with PDF annotation support. Written in C++ with GTK3, supporting Linux (e.g. Ubuntu, Debian, Arch, SUSE), macOS and Windows 10. Supports pen input fr…

A cross-platform file change monitor with multiple backends: Apple macOS File System Events, *BSD kqueue, Solaris/Illumos File Events Notification, Linux inotify, Microsoft Windows and a stat()-bas…

cuML - RAPIDS Machine Learning Library

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

tools for working with genome variation graphs

JackTrip: multi-machine audio network performance over the Internet.

SPAdes Genome Assembler

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Python and C++ code for reading and writing genomics data.

The second version of the Kraken taxonomic sequence classification system

A high-performance, Pythonic language for bioinformatics

A fast and sensitive gapped read aligner

Ultra-fast and memory-efficient (meta-)genome assembler

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

🔬 Assemble large genomes using short reads

Program for analysing NGS data.

Kraken taxonomic sequence classification system

Scaling Single Cell Analysis to Millions of Cells

Genetic multiplexing of barcoded single cell RNA-seq

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

The R package manager that is blazingly fast ⚡. Powered by mamba.

A toolkit for QC and visualization of ATAC-seq results.

Core library of the Genome Analysis Toolbox with de-Bruijn graph

Source Code for 'Modern C++ for Absolute Beginners' by Slobodan Dmitrović

Fast motif matching in R

➗ SIMD-accelerated bitwise hamming distance Python module for hexadecimal strings

Computational Framework to reconstructing tumor clone structures