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@dfci @ECMWFCode4Earth @wikilimo @HaghverdiLab @ls-ludwig-lab

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Starred repositories

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Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

Python 149 27 Updated Mar 19, 2025

Workflows for pre-processing sequencing data from sequence census assays

Jupyter Notebook 7 2 Updated Mar 14, 2025

AI models trained by Google to classify species in images from motion-triggered widlife cameras.

Jupyter Notebook 213 20 Updated Mar 19, 2025
HTML 6 5 Updated Mar 18, 2025

PyTorch Wildlife: a Collaborative Deep Learning Framework for Conservation.

Jupyter Notebook 842 256 Updated Mar 19, 2025

GPU implementation of ARD NMF

Python 41 15 Updated Jul 6, 2023

Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

Python 77 21 Updated Feb 21, 2025

A good looking terminal emulator which mimics the old cathode display...

QML 23,064 877 Updated Jun 14, 2024

R package for extracting and visualizing mutational patterns in base substitution catalogues

R 9 Updated Apr 5, 2024

reuse is a tool for compliance with the REUSE recommendations.

Python 458 157 Updated Mar 16, 2025

BEELINE: evaluation of algorithms for gene regulatory network inference

Python 181 53 Updated Feb 14, 2025

Visualization techniques for clonal evolution

R 6 1 Updated Jan 29, 2025

Anthropic's educational courses

Jupyter Notebook 9,660 851 Updated Nov 26, 2024

A collection of awesome mathematics and computer science courses

118 10 Updated Dec 31, 2024

AI-Driven Code Generation, Explanation and Execution for Data Analysis

R 17 5 Updated Sep 11, 2024

Autonomous coding agent right in your IDE, capable of creating/editing files, executing commands, using the browser, and more with your permission every step of the way.

TypeScript 35,540 3,593 Updated Mar 19, 2025

A single cell transcriptomics pipeline for QC, integration and making the data presentable

Nextflow 50 17 Updated Mar 3, 2025
Jupyter Notebook 9 Updated Feb 12, 2025

The complete sequence of a human genome

946 98 Updated Nov 19, 2024

Simple simulation of single-cell RNA sequencing data

R 225 57 Updated Feb 25, 2025

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

C++ 795 166 Updated May 29, 2024

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Python 2,940 573 Updated Feb 24, 2025

Dirichlet Process based methods for subclonal reconstruction of tumours

R 29 16 Updated Oct 4, 2024

MRtree R implementation

HTML 11 4 Updated Mar 1, 2023

CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)

R 22 5 Updated Mar 18, 2025

Gaussian mixture models in PyTorch.

Python 546 88 Updated Jul 15, 2023

cuML - RAPIDS Machine Learning Library

C++ 4,475 559 Updated Mar 19, 2025

Gaussian mixture models, k-means, mini-batch-kmeans and k-medoids clustering

R 84 29 Updated Jun 19, 2024

❗ This is a read-only mirror of the CRAN R package repository. mclust — Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation. Homepage: https://mclust-org.g…

R 21 18 Updated Apr 30, 2024
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