new multi-SEM layer offset process (part D) #225
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…mageProcessorWithMasks behavior is to drop the mask with just a System.err.println statement.
…e size matches the tile spec size so that rendered image dimensions remain consistent with mask specifications.
…oid incorrectly matching SFOV edges within MFOV-as-tile images of areas that have very little tissue. One example of a pair that gets incorrectly connected with 48 matches at render scale 0.3 is w60_s360_r00_gc MFOV 13 in z 1 and 2.
…montage minNumInliers 100 for both passes, make cross minNumInliers 150 for both passes, increase matchMaxEpsilonFullScale to 20
… for new problem area
…alignTask instance constructor, explicitly log layerMfovDevString in run method to workaround missing context in Google Logs Explorer, remove try block from run method and let exceptions bubble out
…nfo as JavaRenderTilesClientInfoForLayerMfov, increase Spark parallelism for alignAndIntensityCorrectMfovAsTileStacks and buildRenderedMfovAsTileStacks
…computing mean, add elapsedSeconds to run log
…0.0,0.0) for MFOV-as-tile test H
…ad of just one point
…st option, remove no longer needed renameMatchCollectionAlignStackAndRoughStack method
…ach MFOV-as-tile stack
… return removal tile pair information instead of just a count for improved logging on the driver, rename RemoveMatchClient as RemoveMatchPairClient
… Spark parallelism for MfovPrealignTask jobs
…and add a few more utility scripts there
…ction MFOV prealign and intensity correction
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
follow-up work to #224