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Spectral recovery update#2273

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Alexander-Sol wants to merge 54 commits intosmith-chem-wisc:mastersmith-chem-wisc/MetaMorpheus:masterfrom Alexander-Sol:SpectralRecoveryUpdateAlexander-Sol/MetaMorpheus:SpectralRecoveryUpdateCopy head branch name to clipboard

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Commits

Commits on Apr 19, 2023

• 1.0.2 final commit with mzLib 5.0.39

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  dd03456

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Commits on Apr 21, 2023

• added new mzlib

  nbollis

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  dbcdf3e

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Commits on Apr 25, 2023

• Started refactor of MCSE

  Alexander-Sol

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  9d413a9

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Commits on Apr 26, 2023

• Tenatively finished MCSE refactor

  Alexander-Sol

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  ed26a3f

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• Fixed most tests. SpectralRecoveryResults stills has an error

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  360f4c6

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• Edited tests to accommodate increased performance

  Alexander-Sol

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• reverted accidental changes to GlobalVariables

  Alexander-Sol

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• Deleted extraneous RecoveredMs2Scan class

  Alexander-Sol

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• minor edit

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• minor changes

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Commits on Apr 29, 2023

• Updated to most recent mzlib 1.0.139

  nbollis

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  6ee0e92

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• Merge branch 'master' into 102with539mzlib

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  e0adadf

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• Fixed a metadraw test

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• Added Readers to product.wxs

  Alexander-Sol

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  1f64e28

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• Merge pull request smith-chem-wisc#2 from Alexander-Sol/539update

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Commits on May 16, 2023

• Renamed folder: MbrAnalysis -> SpectralRecovery

  Alexander-Sol

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• Removed unneccesary locks

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  f6b7f5a

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• Edited PeptideSpectralMatch for clarity

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• SpectralRecovery refactor

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• Merge branch '539update' into SpectralRecoveryUpdate

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• 539 update + null checks

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• Added variable window width for SpectralRecovery in GUI+SearchParams

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Commits on May 18, 2023

• minorChange

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• Writing refactor

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• Tests are passing

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Commits on May 19, 2023

• minor changes

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Commits on May 22, 2023

• Additional output info

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  63e90f4

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• Deleted unused files

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  2f8e917

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• Merge branch 'master' into SpectralRecoveryUpdate

  Alexander-Sol

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Commits on May 24, 2023

• Deleted unused code, increased test coverage

  Alexander-Sol

  committed
  0573af0

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• Merge branch 'SpectralRecoveryUpdate' of https://github.com/Alexander-Sol/MetaMorpheus into SpectralRecoveryUpdate

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Commits on May 25, 2023

• Updated exception handling and made minor changes to spectral library generation

  Alexander-Sol

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  16fbfa1

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• Refactored spectralLibraryGeneration

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• Refactored UpdateSpectralLibrary

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• Fixed merge conflicts

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  497d9a2

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• Didn't fix nullref exception

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  cf42b62

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• Fixed test broken by changed file name

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  42cc350

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• Merge branch 'SpectralLibraryRefactor' into SpectralRecoveryUpdate

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Commits on May 30, 2023

• idk

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  2a34a09

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• Increased test coverage

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• Merge branch 'SpectralLibraryRefactor' into SpectralRecoveryUpdate

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  882ecdc

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• Started MaxQuant merge

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  341bcd6

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• Updated MaxQuant reading

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Commits on Jun 1, 2023

• Added MaxQuantReader

  Alexander-Sol

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• Removed call to GetClosestOneBasedSpectrumNumber

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Commits on Jun 9, 2023

• minor

  Alexander-Sol

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  dfc37b3

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Commits on Jul 12, 2023

• Resolved merge conflicts

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  dab25d9

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• Fixed merge conflicts

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  8c4c515

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• Actuall fixed merge conflicts

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  bfd195a

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• Fixed tests using reflection and chromatographic peak objects

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  291c689

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• close connections

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• Change spectralRecoveryWindowWidth to DoubleTextBoxControl

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Commits on Jul 13, 2023

• Added console output to tests for appveyor bug hunt

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Commits on Jul 14, 2023

• Broken version of mzLib

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