Code

Gptmd approach update#2419

Code

Merged

nbollis merged 39 commits intosmith-chem-wisc:mastersmith-chem-wisc/MetaMorpheus:masterfrom trishorts:gptmdApproachUpdatetrishorts/MetaMorpheus:gptmdApproachUpdateCopy head branch name to clipboardNov 16, 2024

+36,524-140

Commits

Commits on Aug 26, 2024

• update mzlib nuget package to 551

  trishorts

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  bd5aefc

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Commits on Sep 5, 2024

• Merge remote-tracking branch 'upstream/master'

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Commits on Sep 18, 2024

• use psms score to revise what ptms are added in gptmd

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  5e65835

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Commits on Sep 19, 2024

• now deals w/ variants

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  dd2cbfa

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• fix unit testts

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  7a7dad6

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• Merge remote-tracking branch 'upstream/master' into gptmdApproachUpdate

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  22fb336

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• unused lines

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• load files in background

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Commits on Sep 20, 2024

• add parallelization and eliminate pep

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  ef44e03

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• fix unit tests

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  f33313b

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• yo

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  5a3445b

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• fix those unit tests

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  2dcc22c

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• fix unit test

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  b7371d0

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Commits on Sep 23, 2024

• test gptmd DissociationType Autodetect

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Commits on Sep 24, 2024

• gptmd test mod before variant

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  bf0401d

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• new test

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  c44a719

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• Merge branch 'master' into gptmdApproachUpdate

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• Merge branch 'master' into gptmdApproachUpdate

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Commits on Sep 27, 2024

• delete unreachable code

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• unit test for xcorr process spectra and matched ion with unknown mass

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• Test MatchFragmentIons when scan has no peaks

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  71c2274

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• test gptmd task with contaminant database

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  46f902e

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• return missing comments

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• Merge branch 'gptmdApproachUpdate' of https://github.com/trishorts/MetaMorpheus into gptmdApproachUpdate

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• Merge branch 'master' into gptmdApproachUpdate

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Commits on Sep 30, 2024

• more unit test coverage for modification analysis engine

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  04c3ed8

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• Merge branch 'gptmdApproachUpdate' of https://github.com/trishorts/MetaMorpheus into gptmdApproachUpdate

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Commits on Oct 3, 2024

• Merge branch 'master' into gptmdApproachUpdate

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  51b1c58

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Commits on Oct 30, 2024

• Merge branch 'master' into gptmdApproachUpdate

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Commits on Nov 4, 2024

• Merge branch 'master' into gptmdApproachUpdate

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• Merge branch 'master' into gptmdApproachUpdate

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  ba4f69b

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Commits on Nov 8, 2024

• Merge remote-tracking branch 'upstream/master' into gptmdApproachUpdate

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  9b398a4

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• fix unit test

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  committed
  b26f50d

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• Merge branch 'gptmdApproachUpdate' of https://github.com/trishorts/MetaMorpheus into gptmdApproachUpdate

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Commits on Nov 11, 2024

• works on my machine

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  a1a98d4

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Commits on Nov 12, 2024

• fix missing prose line

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  976570a

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• eliminate unused code

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  d821dde

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Commits on Nov 13, 2024

• merge upstream

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  688b112

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• fix merge problems

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  f3d1ca3

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