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Increased the Q-value threshold for Top-Down PEP positive training examples #2427

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merged 5 commits into from
Oct 17, 2024

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Alexander-Sol
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Peptide-level q-value cutoff for positive training examples is now 0.025

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codecov bot commented Oct 17, 2024

Codecov Report

Attention: Patch coverage is 78.57143% with 3 lines in your changes missing coverage. Please review.

Project coverage is 93.67%. Comparing base (2962329) to head (c48e06b).
Report is 1 commits behind head on master.

Files with missing lines Patch % Lines
...pheus/EngineLayer/FdrAnalysis/PEPAnalysisEngine.cs 75.00% 2 Missing ⚠️
...heus/EngineLayer/FdrAnalysis/SpectralMatchGroup.cs 83.33% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #2427      +/-   ##
==========================================
- Coverage   93.67%   93.67%   -0.01%     
==========================================
  Files         141      141              
  Lines       21930    21932       +2     
  Branches     3007     3008       +1     
==========================================
+ Hits        20544    20545       +1     
- Misses        934      935       +1     
  Partials      452      452              
Files with missing lines Coverage Δ
...heus/EngineLayer/FdrAnalysis/SpectralMatchGroup.cs 85.71% <83.33%> (ø)
...pheus/EngineLayer/FdrAnalysis/PEPAnalysisEngine.cs 94.96% <75.00%> (-0.12%) ⬇️

@nbollis nbollis merged commit b753e3c into smith-chem-wisc:master Oct 17, 2024
5 of 6 checks passed
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4 participants