Ptm stoich #2475
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Ptm stoich #2475
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… branch of mzlib. Code is untestested. Have seen some discrepancies with the quantity of quantified mods and their indexing.
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WIP
Add occupancy calculation to MM using peptide intensities from FlashLFQ. Backend calculation currently implemented in MzLib/ptm_stoich branch in the
MzLib.MzLibUtil.PositionFrequencyAnalysisclass. Draft PR at the moment until code is tested and troubleshooted. In MM, the updating of the ProteinGroup.ModInfo field with intensity-based stoichiometry is done in thePostSearchAnalysis.QuantificationAnalysis()method for now.